Photochromobilin-free form of Arabidopsis thaliana phytochrome A - apo-AtphyA
Pr conformer of Arabidopsis thaliana phytochrome A - AtphyA-Pr
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8isj
Q-score: 0.43
Zhang Y, Lin X, Ma C, Zhao J, Shang X, Wang Z, Xu B, Gao N, Deng XW, Wang J
Cell Res (2023) 33 pp. 806-809 [ Pubmed: 37491602 DOI: doi:10.1038/s41422-023-00858-4 ]
- Phytochrome a (124 kDa, Protein from Arabidopsis thaliana)
- Pr conformer of arabidopsis thaliana phytochrome a - atphya-pr (Complex from Arabidopsis thaliana)
- 3-[5-[[(3~{r},4~{r})-3-ethyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-2-[[5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{h}-pyrrol-2-yl]methyl]-4-methyl-1~{h}-pyrrol-3-yl]propanoic acid (586 Da, Ligand)
Pr conformer of Zea mays phytochrome A1 - ZmphyA1-Pr
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8isk
Q-score: 0.415
Zhang Y, Lin X, Ma C, Zhao J, Shang X, Wang Z, Xu B, Gao N, Deng XW, Wang J
Cell Res (2023) 33 pp. 806-809 [ Pubmed: 37491602 DOI: doi:10.1038/s41422-023-00858-4 ]
- Phytochrome (124 kDa, Protein from Zea mays)
- Zea mays phytochrome a1 (zmphya1-pr) (Complex from Arabidopsis thaliana)
- 3-[5-[[(3~{r},4~{r})-3-ethyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-2-[[5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{h}-pyrrol-2-yl]methyl]-4-methyl-1~{h}-pyrrol-3-yl]propanoic acid (586 Da, Ligand)
Cryo-EM structure of Arabidopsis phytochrome A.
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8iff
Q-score: 0.405
Wang J, Zhou C, Guan Z, Wang Q, Zhao J, Wang L, Zhang L, Zhang D, Deng XW, Ma L, Yin P
Cell Res (2023) 33 pp. 802-805 [ Pubmed: 37402899 DOI: doi:10.1038/s41422-023-00847-7 ]
- Phytochrome a (124 kDa, Protein from Arabidopsis thaliana)
- Phytochrome a (Complex from Arabidopsis thaliana)
- 3-[5-[[(3~{r},4~{r})-3-ethyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-2-[[5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{h}-pyrrol-2-yl]methyl]-4-methyl-1~{h}-pyrrol-3-yl]propanoic acid (586 Da, Ligand)
Composite map of CryoEM structure of Arabidopsis thaliana phytochrome A
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8f5z
Q-score: 0.437
Burgie ES, Li H, Gannam ZTK, McLoughlin KE, Vierstra RD, Li H
Nat Plants (2023) 9 pp. 1116-1129 [ DOI: doi:10.1038/s41477-023-01435-8 Pubmed: 37291396 ]
- Phytochrome a (124 kDa, Protein from Arabidopsis thaliana)
- 3-[5-[[(3~{r},4~{r})-3-ethyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-2-[[5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{h}-pyrrol-2-yl]methyl]-4-methyl-1~{h}-pyrrol-3-yl]propanoic acid (586 Da, Ligand)
- Phytochrome a (249 kDa, Complex from Arabidopsis thaliana)
CryoEM structure of Arabidopsis thaliana phytochrome A (consensus map)
Burgie ES, Li H, Gannam ZTK, McLoughlin KE, Vierstra RD, Li H
Nat Plants (2023) 9 pp. 1116-1129 [ Pubmed: 37291396 DOI: doi:10.1038/s41477-023-01435-8 ]
- Phytochrome a (249 kDa, Complex from Arabidopsis thaliana)
- Arabidopsis thaliana phytochrome a (Protein from Arabidopsis thaliana)
CryoEM structure of Arabidopsis thaliana phytochrome A (focused map of platform)
Burgie ES, Li H, Gannam ZTK, McLoughlin KE, Vierstra RD, Li H
Nat Plants (2023) 9 pp. 1116-1129 [ Pubmed: 37291396 DOI: doi:10.1038/s41477-023-01435-8 ]
- Phytochrome a (249 kDa, Complex from Arabidopsis thaliana)
- Phytochrome a (Protein from Arabidopsis thaliana)
CryoEM structure of Arabidopsis thaliana phytochrome A (focused map of HKRD)
Burgie ES, Li H, Gannam ZTK, McLoughlin KE, Vierstra RD, Li H
Nat Plants (2023) 9 pp. 1116-1129 [ DOI: doi:10.1038/s41477-023-01435-8 Pubmed: 37291396 ]
- Phytochrome a (Protein from Arabidopsis thaliana)
- Phytochrome a (249 kDa, Complex from Arabidopsis thaliana)
CryoEM map of Arabidopsis thaliana phytochrome B
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7rzw
Q-score: 0.475
Li H, Burgie ES, Gannam ZTK, Li H, Vierstra RD
Nature (2022) 604 pp. 127-133 [ Pubmed: 35355010 DOI: doi:10.1038/s41586-022-04529-z ]
- Phytochrome (250 kDa, Complex from Arabidopsis thaliana)
- Phytochrome b (129 kDa, Protein from Arabidopsis thaliana)
- 3-[5-[[(3~{r},4~{r})-3-ethyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-2-[[5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{h}-pyrrol-2-yl]methyl]-4-methyl-1~{h}-pyrrol-3-yl]propanoic acid (586 Da, Ligand)