EMDB < Search results

EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

Edit your search query here and hit Return to execute it:

sample_name:"Pre-mRNA-processing-splicing factor 8" AND xref_links:"cath"

Sort by: Download

Showing 1 - 4 of 4. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [4]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

EMD-9645

Download Map 3D View

Cryo-EM structure of a human post-catalytic spliceosome (P complex) at 3.0 angstrom

Release date: March 13, 2019
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6icz
Q-score: 0.284

Zhang X, Zhan X, Yan C, Zhang W, Liu D, Lei J, Shi Y

Cell Res (2019) 29 pp. 274-285 [ DOI: doi:10.1038/s41422-019-0143-x Pubmed: 30728453 ]

Sample:

U2snrna (60 kDa, RNA from Human)
116 kda u5 small nuclear ribonucleoprotein component (109 kDa, Protein from Human)
Peptidyl-prolyl cis-trans isomerase-like 1 (18 kDa, Protein from Human)
Human post_catalytic spliceosome (Complex from Homo sapiens)
Pre-mrna-splicing factor syf1 (100 kDa, Protein from Human)
Rna helicase aquarius (171 kDa, Protein from Human)
Pre-mrna-splicing factor cwc22 homolog (105 kDa, Protein from Human)
U2 small nuclear ribonucleoprotein b'' (25 kDa, Protein from Human)
Guanosine-5'-triphosphate (523 Da, Ligand)
Small nuclear ribonucleoprotein sm d3 (13 kDa, Protein from Human)
Small nuclear ribonucleoprotein sm d2 (13 kDa, Protein from Human)
Atp-dependent rna helicase dhx8 (139 kDa, Protein from Human)
Adenosine-5'-triphosphate (507 Da, Ligand)
U6snrna (34 kDa, RNA from Human)
Serine/arginine repetitive matrix protein 2 (300 kDa, Protein from Human)
Magnesium ion (24 Da, Ligand)
Rna-binding protein 8a (19 kDa, Protein from Human)
U5 small nuclear ribonucleoprotein 200 kda helicase (244 kDa, Protein from Human)
Protein bud31 homolog (17 kDa, Protein from Human)
Pre-mrna-splicing factor syf2 (28 kDa, Protein from Human)
Pre-mrna-splicing factor slu7 (68 kDa, Protein from Human)
Small nuclear ribonucleoprotein-associated protein (23 kDa, Protein from Human)
Inositol hexakisphosphate (660 Da, Ligand)
U5 small nuclear ribonucleoprotein 40 kda protein (39 kDa, Protein from Human)
U2 small nuclear ribonucleoprotein a' (28 kDa, Protein from Human)
Prkr-interacting protein 1 (21 kDa, Protein from Human)
Pleiotropic regulator 1 (57 kDa, Protein from Human)
Cell division cycle 5-like protein (92 kDa, Protein from Human)
Zinc ion (65 Da, Ligand)
Protein mago nashi homolog 2 (17 kDa, Protein from Human)
Snw domain-containing protein 1 (61 kDa, Protein from Human)
Pre-mrna-splicing factor spf27 (26 kDa, Protein from Human)
Protein casc3 (76 kDa, Protein from Human)
Pre-mrna-processing factor 19 (55 kDa, Protein from Human)
Peptidyl-prolyl cis-trans isomerase e (33 kDa, Protein from Human)
Small nuclear ribonucleoprotein f (9 kDa, Protein from Human)
Pre-mrna-processing factor 17 (65 kDa, Protein from Human)
Pre-mrna-processing-splicing factor 8 (273 kDa, Protein from Human)
Pre-mrna (87 kDa, RNA from Human)
Small nuclear ribonucleoprotein sm d1 (13 kDa, Protein from Human)
U5snrna (37 kDa, RNA from Human)
Eukaryotic initiation factor 4a-iii (46 kDa, Protein from Human)
Spliceosome-associated protein cwc15 homolog (26 kDa, Protein from Human)
Small nuclear ribonucleoprotein e (10 kDa, Protein from Human)
Pre-mrna-splicing factor rbm22 (46 kDa, Protein from Human)
Crooked neck-like protein 1 (100 kDa, Protein from Human)
Small nuclear ribonucleoprotein g (8 kDa, Protein from Human)

[Show more]

EMD-9646

Download Map 3D View

Cryo-EM structure of a human intron lariat spliceosome prior to Prp43 loaded (ILS1 complex) at 2.9 angstrom resolution

Release date: March 13, 2019
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 6id0
Q-score: 0.314

Zhang X, Zhan X, Yan C, Zhang W, Liu D, Lei J, Shi Y

Cell Res (2019) 29 pp. 274-285 [ DOI: doi:10.1038/s41422-019-0143-x Pubmed: 30728453 ]

Sample:

U2snrna (60 kDa, RNA from Human)
116 kda u5 small nuclear ribonucleoprotein component (109 kDa, Protein from Human)
Peptidyl-prolyl cis-trans isomerase-like 1 (18 kDa, Protein from Human)
Pre-mrna-splicing factor syf1 (100 kDa, Protein from Human)
Rna helicase aquarius (171 kDa, Protein from Human)
U2 small nuclear ribonucleoprotein b'' (25 kDa, Protein from Human)
Guanosine-5'-triphosphate (523 Da, Ligand)
Small nuclear ribonucleoprotein sm d3 (13 kDa, Protein from Human)
Small nuclear ribonucleoprotein sm d2 (13 kDa, Protein from Human)
U6snrna (34 kDa, RNA from Human)
Human intron lariat spliceosome (Complex from Homo sapiens)
Magnesium ion (24 Da, Ligand)
Protein bud31 homolog (17 kDa, Protein from Human)
Pre-mrna-splicing factor syf2 (28 kDa, Protein from Human)
Small nuclear ribonucleoprotein-associated protein (23 kDa, Protein from Human)
Inositol hexakisphosphate (660 Da, Ligand)
Cwf19-like protein 2 (103 kDa, Protein from Human)
U5 small nuclear ribonucleoprotein 40 kda protein (39 kDa, Protein from Human)
U2 small nuclear ribonucleoprotein a' (28 kDa, Protein from Human)
Pleiotropic regulator 1 (57 kDa, Protein from Human)
Cell division cycle 5-like protein (92 kDa, Protein from Human)
Zinc ion (65 Da, Ligand)
Snw domain-containing protein 1 (61 kDa, Protein from Human)
Pre-mrna-splicing factor spf27 (26 kDa, Protein from Human)
Small nuclear ribonucleoprotein e (10 kDa, Protein from Human)
Small nuclear ribonucleoprotein f (9 kDa, Protein from Human)
Pre-mrna-processing factor 17 (65 kDa, Protein from Human)
Pre-mrna-processing-splicing factor 8 (273 kDa, Protein from Human)
Pre-mrna-processing factor 19 (55 kDa, Protein from Human)
Small nuclear ribonucleoprotein sm d1 (13 kDa, Protein from Human)
U5snrna (37 kDa, RNA from Human)
Peptidyl-prolyl cis-trans isomerase e (33 kDa, Protein from Human)
Spliceosome-associated protein cwc15 homolog (26 kDa, Protein from Human)
Pre-mrna (87 kDa, RNA from Human)
Pre-mrna-splicing factor rbm22 (46 kDa, Protein from Human)
Crooked neck-like protein 1 (100 kDa, Protein from Human)
Small nuclear ribonucleoprotein g (8 kDa, Protein from Human)

[Show more]

EMD-9647

Download Map 3D View

Cryo-EM structure of a human intron lariat spliceosome after Prp43 loaded (ILS2 complex) at 2.9 angstrom resolution

Release date: March 13, 2019
Resolution: 2.86 Å
EM Method: Single-particle
Fitted PDBs: 6id1
Q-score: 0.291

Zhang X, Zhan X, Yan C, Zhang W, Liu D, Lei J, Shi Y

Cell Res (2019) 29 pp. 274-285 [ Pubmed: 30728453 DOI: doi:10.1038/s41422-019-0143-x ]

Sample:

Inositol hexakisphosphate (660 Da, Ligand)
Snw domain-containing protein 1 (61 kDa, Protein from Human)
U2 small nuclear ribonucleoprotein b'' (25 kDa, Protein from Human)
Crooked neck-like protein 1 (100 kDa, Protein from Human)
Spliceosome-associated protein cwc15 homolog (26 kDa, Protein from Human)
U5 small nuclear ribonucleoprotein 40 kda protein (39 kDa, Protein from Human)
Pre-mrna-processing factor 17 (65 kDa, Protein from Human)
Guanosine-5'-triphosphate (523 Da, Ligand)
116 kda u5 small nuclear ribonucleoprotein component (109 kDa, Protein from Human)
U2 small nuclear ribonucleoprotein a' (28 kDa, Protein from Human)
Small nuclear ribonucleoprotein sm d1 (13 kDa, Protein from Human)
U6snrna (34 kDa, RNA from Human)
Rna helicase aquarius (171 kDa, Protein from Human)
Pleiotropic regulator 1 (57 kDa, Protein from Human)
Pre-mrna-splicing factor atp-dependent rna helicase dhx15 (91 kDa, Protein from Human)
Zinc ion (65 Da, Ligand)
Small nuclear ribonucleoprotein-associated protein (23 kDa, Protein from Human)
Pre-mrna (87 kDa, RNA from Human)
Peptidyl-prolyl cis-trans isomerase e (33 kDa, Protein from Human)
Cell division cycle 5-like protein (92 kDa, Protein from Human)
Pre-mrna-processing factor 19 (55 kDa, Protein from Human)
Small nuclear ribonucleoprotein f (9 kDa, Protein from Human)
Peptidyl-prolyl cis-trans isomerase-like 1 (18 kDa, Protein from Human)
Small nuclear ribonucleoprotein sm d2 (13 kDa, Protein from Human)
Protein bud31 homolog (17 kDa, Protein from Human)
Small nuclear ribonucleoprotein sm d3 (13 kDa, Protein from Human)
Pre-mrna-splicing factor rbm22 (46 kDa, Protein from Human)
Cwf19-like protein 2 (103 kDa, Protein from Human)
Small nuclear ribonucleoprotein e (10 kDa, Protein from Human)
Small nuclear ribonucleoprotein g (8 kDa, Protein from Human)
Magnesium ion (24 Da, Ligand)
Human intron lariat spliceosome (Complex from Homo sapiens)
Pre-mrna-splicing factor spf27 (26 kDa, Protein from Human)
U2snrna (60 kDa, RNA from Human)
Pre-mrna-splicing factor syf1 (100 kDa, Protein from Human)
Pre-mrna-processing-splicing factor 8 (273 kDa, Protein from Human)
Pre-mrna-splicing factor syf2 (28 kDa, Protein from Human)
U5snrna (37 kDa, RNA from Human)

[Show more]

EMD-4255

Download Map 3D View

human Bact spliceosome core structure

Release date: Aug. 29, 2018
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6ff4
Q-score: 0.443

Haselbach D, Komarov I, Agafonov DE, Hartmuth K, Graf B, Dybkov O, Urlaub H, Kastner B, Luhrmann R, Stark H

Cell (2018) 172 pp. 454-464.e11 [ Pubmed: 29361316 DOI: doi:10.1016/j.cell.2018.01.010 ]

Sample:

Peptidyl-prolyl cis-trans isomerase cwc27 homolog (53 kDa, Protein from Human)
Splicing factor 3b subunit 1 (146 kDa, Protein from Human)
116 kda u5 small nuclear ribonucleoprotein component (109 kDa, Protein from Human)
Peptidyl-prolyl cis-trans isomerase-like 1 (18 kDa, Protein from Human)
Splicing factor 3b subunit 6 (14 kDa, Protein from Human)
Guanosine-5'-triphosphate (523 Da, Ligand)
Splicing factor 3a subunit 2 (49 kDa, Protein from Human)
Serine/arginine repetitive matrix protein 1 (102 kDa, Protein from Human)
Serine/arginine repetitive matrix protein 2 (300 kDa, Protein from Human)
Ring finger protein 113a (38 kDa, Protein from Human)
Magnesium ion (24 Da, Ligand)
U6 snrna (34 kDa, RNA from Homo sapiens)
Protein bud31 homolog (17 kDa, Protein from Human)
U2 snrna (60 kDa, RNA from Homo sapiens)
Inositol hexakisphosphate (660 Da, Ligand)
Phd finger-like domain-containing protein 5a (12 kDa, Protein from Human)
Splicing factor 3b subunit 5 (10 kDa, Protein from Human)
Snw domain-containing protein 1 (61 kDa, Protein from Human)
Pleiotropic regulator 1 (57 kDa, Protein from Human)
Cell division cycle 5-like protein (92 kDa, Protein from Human)
Splicing factor 3b subunit 2 (100 kDa, Protein from Human)
Pre mrna (153 kDa, RNA from Homo sapiens)
Zinc ion (65 Da, Ligand)
Human bact spliceosome state 1 unmasked (4 MDa, Complex from Homo sapiens)
Pre-mrna-processing factor 17 (65 kDa, Protein from Human)
U5 snrna (36 kDa, RNA from Homo sapiens)
Pre-mrna-processing-splicing factor 8 (273 kDa, Protein from Human)
Spliceosome-associated protein cwc15 homolog (26 kDa, Protein from Human)
Pre-mrna-splicing factor rbm22 (46 kDa, Protein from Human)
Splicing factor 3b subunit 3 (135 kDa, Protein from Human)
Crooked neck-like protein 1 (100 kDa, Protein from Human)
Rna-binding motif protein, x-linked 2 (37 kDa, Protein from Human)
Bud13 homolog (70 kDa, Protein from Human)

[Show more]

Sort by: Download

Showing 1 - 4 of 4. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [4]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Field: