Electron Microscopy Data Bank

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Cryo-EM structure of Symbiodinium photosystem I

Release date: May 15, 2024
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8jjr
Q-score: 0.575

Zhao LS, Wang N, Li K, Li CY, Guo JP, He FY, Liu GM, Chen XL, Gao J, Liu LN, Zhang YZ

Nat Commun (2024) 15 pp. 2392-2392 [ DOI: doi:10.1038/s41467-024-46791-x Pubmed: 38493166 ]

Sample:

Pcpi-1 (28 kDa, Protein from Symbiodinium sp.)
Psat (13 kDa, Protein from Symbiodinium sp.)
Pcp-11 (21 kDa, Protein from Symbiodinium sp.)
Psai (19 kDa, Protein from Symbiodinium sp.)
Phylloquinone (450 Da, Ligand)
Psad (32 kDa, Protein from Symbiodinium sp.)
Pcpi-5 (26 kDa, Protein from Symbiodinium sp.)
Chlorophyll a (893 Da, Ligand)
Pcpi-3 (27 kDa, Protein from Symbiodinium sp.)
[(1~{s},5~{r})-3,3,5-trimethyl-5-oxidanyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(1~{s},4~{s},6~{r})-2,2,6-trimethyl-4-oxidanyl-7-oxabicyclo[4.1.0]heptan-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenylidene]cyclohexyl] ethanoate (642 Da, Ligand)
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
Photosystem i of symbiodinium (Complex from Symbiodinium sp.)
Pcpi-7 (27 kDa, Protein from Symbiodinium sp.)
Chlorophyll c2 (608 Da, Ligand)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Pcpi-2 (15 kDa, Protein from Symbiodinium sp.)
Beta-carotene (536 Da, Ligand)
Psam (14 kDa, Protein from Symbiodinium sp.)
Peridinin (630 Da, Ligand)
Pcpi-10 (27 kDa, Protein from Symbiodinium sp.)
Psal (38 kDa, Protein from Symbiodinium sp.)
Pcpi-13 (23 kDa, Protein from Symbiodinium sp.)
Pcpi-6 (19 kDa, Protein from Symbiodinium sp.)
Psaf (29 kDa, Protein from Symbiodinium sp.)
Psau (24 kDa, Protein from Symbiodinium sp.)
(3s,3'r,5r,6s,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol (582 Da, Ligand)
Pcpi-9 (22 kDa, Protein from Symbiodinium sp.)
Psab (74 kDa, Protein from Symbiodinium sp.)
Psaa (76 kDa, Protein from Symbiodinium sp.)
Pcpi-8 (30 kDa, Protein from Symbiodinium sp.)
1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
Pcpi-12 (21 kDa, Protein from Symbiodinium sp.)
Dodecyl-alpha-d-maltoside (510 Da, Ligand)
Iron/sulfur cluster (351 Da, Ligand)
Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
Psac (16 kDa, Protein from Symbiodinium sp.)
Psae (13 kDa, Protein from Symbiodinium sp.)
Psaj (15 kDa, Protein from Symbiodinium sp.)
Psar (17 kDa, Protein from Symbiodinium sp.)
Pcpi-4 (24 kDa, Protein from Symbiodinium sp.)

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