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was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

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perform basic research in molecular biology

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offer vital services to scientists in the member states

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represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

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Structural biology

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Structural biology

Heidelberg

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EMBL-EBI: European Bioinformatics Institute

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Epigenetics and neurobiology

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sample_name:"Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16"

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EMD-14146

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Structural organization of a late activated human spliceosome (Baqr, core region)

Release date: May 10, 2023
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7qtt
Q-score: 0.384

Schmitzova J, Cretu C, Dienemann C, Urlaub H, Pena V

Nature (2023) 617 pp. 842-850 [ DOI: doi:10.1038/s41586-023-06049-w Pubmed: 37165190 ]

Sample:

Putative pre-mrna-splicing factor atp-dependent rna helicase dhx16 (119 kDa, Protein from human)
Pre-mrna-splicing factor cwc22 homolog (105 kDa, Protein from human)
U2snrna (60 kDa, RNA from human)
Crooked neck-like protein 1 (100 kDa, Protein from human)
Small nuclear ribonucleoprotein g (8 kDa, Protein from human)
Small nuclear ribonucleoprotein sm d1 (13 kDa, Protein from human)
Phd finger-like domain-containing protein 5a (12 kDa, Protein from human)
Guanosine-5'-triphosphate (523 Da, Ligand)
Inositol hexakisphosphate (660 Da, Ligand)
Small nuclear ribonucleoprotein f (9 kDa, Protein from human)
Small nuclear ribonucleoprotein sm d2 (13 kDa, Protein from human)
Pleiotropic regulator 1 (57 kDa, Protein from human)
Snw domain-containing protein 1 (61 kDa, Protein from human)
Peptidyl-prolyl cis-trans isomerase-like 1 (18 kDa, Protein from human)
Late human activated spliceosome arrested with a dominant-negative mutant of the splicing helicase aquarius (aquarius k829a) (Complex from Homo sapiens)
Small nuclear ribonucleoprotein sm d3 (13 kDa, Protein from human)
Splicing factor 3a subunit 2 (49 kDa, Protein from human)
Splicing factor 3b subunit 1 (146 kDa, Protein from human)
Bud13 homolog (70 kDa, Protein from human)
Zinc ion (65 Da, Ligand)
Ring-type e3 ubiquitin-protein ligase ppil2 (58 kDa, Protein from human)
G-patch domain and kow motifs-containing protein (52 kDa, Protein from human)
Peptidyl-prolyl cis-trans isomerase-like 4 (57 kDa, Protein from human)
Cell division cycle 5-like protein (92 kDa, Protein from human)
Splicing factor 3b subunit 2 (100 kDa, Protein from human)
Minx (102 kDa, RNA from unidentified adenovirus)
Splicing factor 3b subunit 3 (135 kDa, Protein from human)
U6snrna (34 kDa, RNA from Homo sapiens)
Spliceosome-associated protein cwc15 homolog (26 kDa, Protein from human)
Pre-mrna-splicing factor rbm22 (46 kDa, Protein from human)
Magnesium ion (24 Da, Ligand)
Splicing factor 3b subunit 4 (44 kDa, Protein from human)
Small nuclear ribonucleoprotein e (10 kDa, Protein from human)
116 kda u5 small nuclear ribonucleoprotein component (109 kDa, Protein from human)
Protein bud31 homolog (17 kDa, Protein from human)
Ring finger protein 113a (38 kDa, Protein from human)
Small nuclear ribonucleoprotein-associated proteins b and b' (24 kDa, Protein from human)
Splicing factor 3b subunit 5 (10 kDa, Protein from human)
Splicing factor 3a subunit 3 (58 kDa, Protein from human)
Serine/arginine repetitive matrix protein 2 (300 kDa, Protein from human)
Pre-mrna-processing-splicing factor 8 (273 kDa, Protein from human)
U5 snrna (37 kDa, RNA from human)

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EMD-16658

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Structure of a late-stage activated spliceosome (BAqr) arrested with a dominant-negative Aquarius mutant (state B complex).

Release date: May 10, 2023
Resolution: 5.9 Å
EM Method: Single-particle
Fitted PDBs: 8ch6
Q-score: 0.154

Schmitzova J, Cretu C, Dienemann C, Urlaub H, Pena V

Nature (2023) 617 pp. 842-850 [ DOI: doi:10.1038/s41586-023-06049-w Pubmed: 37165190 ]

Sample:

U2 small nuclear ribonucleoprotein a' (28 kDa, Protein from human)
Rnu5a-1 (37 kDa, RNA from human)
Pre-mrna-processing-splicing factor 8 (273 kDa, Protein from human)
Ring finger protein 113a (38 kDa, Protein from human)
Small nuclear ribonucleoprotein e (10 kDa, Protein from human)
Pre-mrna-processing factor 17 (65 kDa, Protein from human)
Snw domain-containing protein 1 (61 kDa, Protein from human)
Splicing factor 3b subunit 5 (10 kDa, Protein from human)
Cell division cycle 5-like protein (92 kDa, Protein from human)
U5 small nuclear ribonucleoprotein 200 kda helicase (244 kDa, Protein from human)
Small nuclear ribonucleoprotein sm d2 (13 kDa, Protein from human)
Pre-mrna-splicing factor cwc22 homolog (105 kDa, Protein from human)
Rnu2-1 (60 kDa, RNA from human)
Pre-mrna-splicing factor syf1 (100 kDa, Protein from human)
Pre-mrna-splicing factor spf27 (26 kDa, Protein from human)
Peptidyl-prolyl cis-trans isomerase e (33 kDa, Protein from human)
Inositol hexakisphosphate (660 Da, Ligand)
Guanosine-5'-triphosphate (523 Da, Ligand)
Pre-mrna-splicing factor rbm22 (46 kDa, Protein from human)
Peptidyl-prolyl cis-trans isomerase-like 4 (57 kDa, Protein from human)
Splicing factor 3b subunit 4 (44 kDa, Protein from human)
Magnesium ion (24 Da, Ligand)
Splicing factor 3b subunit 1 (146 kDa, Protein from human)
Crooked neck-like protein 1 (100 kDa, Protein from human)
Late human activated spliceosome arrested with a dominant-negative mutant of the splicing helicase aquarius (aquarius k829a) (Complex from Homo sapiens)
Intron-binding protein aquarius (171 kDa, Protein from human)
G-patch domain and kow motifs-containing protein (52 kDa, Protein from human)
Small nuclear ribonucleoprotein sm d1 (13 kDa, Protein from human)
Splicing factor 3a subunit 3 (58 kDa, Protein from human)
Rnu6-1 (34 kDa, RNA from Homo sapiens)
Pre-mrna-splicing factor isy1 homolog (33 kDa, Protein from human)
Phd finger-like domain-containing protein 5a (12 kDa, Protein from human)
Splicing factor 3a subunit 1 (88 kDa, Protein from human)
Pre-mrna-processing factor 19 (55 kDa, Protein from human)
Minx-m3 (102 kDa, RNA from unidentified adenovirus)
Small nuclear ribonucleoprotein sm d3 (13 kDa, Protein from human)
Peptidyl-prolyl cis-trans isomerase-like 1 (18 kDa, Protein from human)
U5 small nuclear ribonucleoprotein 40 kda protein (39 kDa, Protein from human)
Splicing factor 3b subunit 3 (135 kDa, Protein from human)
Zinc ion (65 Da, Ligand)
Small nuclear ribonucleoprotein f (9 kDa, Protein from human)
Spliceosome-associated protein cwc15 homolog (26 kDa, Protein from human)
Putative pre-mrna-splicing factor atp-dependent rna helicase dhx16 (119 kDa, Protein from human)
Ring-type e3 ubiquitin-protein ligase ppil2 (58 kDa, Protein from human)
Small nuclear ribonucleoprotein-associated proteins b and b' (24 kDa, Protein from human)
Pleiotropic regulator 1 (57 kDa, Protein from human)
Bud13 homolog (70 kDa, Protein from human)
116 kda u5 small nuclear ribonucleoprotein component (109 kDa, Protein from human)
Protein bud31 homolog (17 kDa, Protein from human)
Serine/arginine repetitive matrix protein 2 (300 kDa, Protein from human)
Splicing factor 3b subunit 2 (100 kDa, Protein from human)
U2 small nuclear ribonucleoprotein b'' (25 kDa, Protein from human)
Splicing factor 3a subunit 2 (49 kDa, Protein from human)
Small nuclear ribonucleoprotein g (8 kDa, Protein from human)

[Show more]

EMD-6889

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cryo-EM structure of a human activated spliceosome (mature Bact) at 5.1 angstrom.

Release date: Sept. 19, 2018
Resolution: 5.1 Å
EM Method: Single-particle
Fitted PDBs: 5z56
Q-score: 0.131

Zhang X, Yan C, Zhan X, Li L, Lei J, Shi Y

Cell Res (2018) 28 pp. 307-322 [ DOI: doi:10.1038/cr.2018.14 Pubmed: 29360106 ]

Sample:

Peptidyl-prolyl cis-trans isomerase cwc27 homolog (53 kDa, Protein from Human)
Splicing factor 3b subunit 1 (146 kDa, Protein from Human)
116 kda u5 small nuclear ribonucleoprotein component (109 kDa, Protein from Human)
Splicing factor 3b subunit 6 (14 kDa, Protein from Human)
Peptidyl-prolyl cis-trans isomerase-like 1 (18 kDa, Protein from Human)
Pre-mrna-splicing factor syf1 (100 kDa, Protein from Human)
U2 small nuclear ribonucleoprotein b'' (25 kDa, Protein from Human)
Pre-mrna-splicing factor cwc22 homolog (105 kDa, Protein from Human)
Guanosine-5'-triphosphate (523 Da, Ligand)
Splicing factor 3a subunit 3 (58 kDa, Protein from Human)
U6 snrna (34 kDa, RNA from Human)
Small nuclear ribonucleoprotein sm d3 (13 kDa, Protein from Human)
Small nuclear ribonucleoprotein sm d2 (13 kDa, Protein from Human)
Splicing factor 3a subunit 2 (49 kDa, Protein from Human)
Serine/arginine repetitive matrix protein 2 (300 kDa, Protein from Human)
Ring finger protein 113a (38 kDa, Protein from Human)
Small nuclear ribonucleoprotein-associated proteins b and b' (23 kDa, Protein from Human)
Magnesium ion (24 Da, Ligand)
U5 small nuclear ribonucleoprotein 200 kda helicase (244 kDa, Protein from Human)
Smad nuclear-interacting protein 1 (45 kDa, Protein from Human)
Protein bud31 homolog (17 kDa, Protein from Human)
Inositol hexakisphosphate (660 Da, Ligand)
Phd finger-like domain-containing protein 5a (12 kDa, Protein from Human)
Splicing factor 3b subunit 5 (10 kDa, Protein from Human)
U5 small nuclear ribonucleoprotein 40 kda protein (39 kDa, Protein from Human)
U2 small nuclear ribonucleoprotein a' (28 kDa, Protein from Human)
U2 snrna (60 kDa, RNA from Human)
Pleiotropic regulator 1 (57 kDa, Protein from Human)
Cell division cycle 5-like protein (92 kDa, Protein from Human)
Splicing factor 3b subunit 2 (100 kDa, Protein from Human)
Splicing factor 3b subunit 4 (44 kDa, Protein from Human)
Zinc ion (65 Da, Ligand)
Pre-mrna-splicing factor spf27 (26 kDa, Protein from Human)
Human activated spliceosome (Complex from Homo sapiens)
U5 snrna (37 kDa, RNA from Human)
Small nuclear ribonucleoprotein e (10 kDa, Protein from Human)
Small nuclear ribonucleoprotein f (9 kDa, Protein from Human)
Splicing factor 3a subunit 1 (88 kDa, Protein from Human)
Pre-mrna-processing-splicing factor 8 (273 kDa, Protein from Human)
Pre-mrna-processing factor 19 (55 kDa, Protein from Human)
Small nuclear ribonucleoprotein sm d1 (13 kDa, Protein from Human)
Skip (62 kDa, Protein from Human)
Pre-mrna-processing factor 17 (65 kDa, Protein from Human)
Spliceosome-associated protein cwc15 homolog (26 kDa, Protein from Human)
Peptidyl-prolyl cis-trans isomerase e (33 kDa, Protein from Human)
Intron-binding protein aquarius (171 kDa, Protein from Human)
Pre-mrna-splicing factor rbm22 (46 kDa, Protein from Human)
Splicing factor 3b subunit 3 (135 kDa, Protein from Human)
Crooked neck-like protein 1 (100 kDa, Protein from Human)
Putative pre-mrna-splicing factor atp-dependent rna helicase dhx16 (119 kDa, Protein from Human)
Rna-binding motif protein, x-linked 2 (37 kDa, Protein from Human)
Small nuclear ribonucleoprotein g (8 kDa, Protein from Human)
Pre-mrna (87 kDa, RNA from unidentified adenovirus)
Bud13 homolog (70 kDa, Protein from Human)

[Show more]

Sort by: Download

Showing 1 - 3 of 3. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [3]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Field: