Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8eyt
Q-score: 0.407
Sun J, Kinman LF, Jahagirdar D, Ortega J, Davis JH
Nat Struct Mol Biol (2023) 30 pp. 1468-1480 [ DOI: doi:10.1038/s41594-023-01078-5 Pubmed: 37653244 ]
- 30s_delta_ksga+ksga (Complex from Escherichia coli)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
- 16s rrna (458 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- Ribosomal rna small subunit methyltransferase a (28 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli)
T.thermophilus 30S ribosome with KsgA, class K1k2
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7v2l
Q-score: 0.524
Singh J, Raina R, Vinothkumar KR, Anand R
ACS Chem Biol (2022) 17 pp. 829-839 [ DOI: doi:10.1021/acschembio.1c00732 Pubmed: 35316014 ]
- 30s ribosomal subunit (Complex from Thermus thermophilus HB8)
- 30s ribosomal protein s11 (13 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s8 (15 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s6 (11 kDa, Protein from Thermus thermophilus HB8)
- 16s ribosomal rna (493 kDa, RNA from Thermus thermophilus HB8)
- 30s ribosomal protein s19 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s17 (12 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s10 (11 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s16 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s13 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s9 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s12 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s15 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein thx (3 kDa, Protein from Thermus thermophilus HB8)
- Rna methyltransferase (Complex from Bacillus subtilis (strain 168))
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s7 (18 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal with bound ksga, a rna methyltransferase at position 2 (746 kDa, Complex)
- 30s ribosomal protein s5 (17 kDa, Protein from Thermus thermophilus HB8)
- Ribosomal rna small subunit methyltransferase a (33 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s18 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s2 (29 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s4 (24 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s20 (11 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s3 (26 kDa, Protein from Thermus thermophilus HB8)
T.thermophilus 30S ribosome with KsgA, class K1k4
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7v2m
Q-score: 0.478
Singh J, Raina R, Vinothkumar KR, Anand R
ACS Chem Biol (2022) 17 pp. 829-839 [ DOI: doi:10.1021/acschembio.1c00732 Pubmed: 35316014 ]
- 30s ribosomal subunit (Complex from Thermus thermophilus HB8)
- 30s ribosomal protein s11 (13 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s8 (15 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s6 (11 kDa, Protein from Thermus thermophilus HB8)
- 16s ribosomal rna (493 kDa, RNA from Thermus thermophilus HB8)
- 30s ribosomal protein s19 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s17 (12 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s10 (11 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s16 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s13 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s9 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s12 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal with bound ksga, a rna methyltransferase (771 kDa, Complex)
- 30s ribosomal protein s15 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein thx (3 kDa, Protein from Thermus thermophilus HB8)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s7 (18 kDa, Protein from Thermus thermophilus HB8)
- Ksga (Complex from Bacillus subtilis (strain 168))
- 30s ribosomal protein s5 (17 kDa, Protein from Thermus thermophilus HB8)
- Ribosomal rna small subunit methyltransferase a (33 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s18 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s2 (29 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s4 (24 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s20 (11 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s3 (26 kDa, Protein from Thermus thermophilus HB8)
T.thermophilus 30S ribosome with KsgA, class K2
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7v2n
Q-score: 0.446
Singh J, Raina R, Vinothkumar KR, Anand R
ACS Chem Biol (2022) 17 pp. 829-839 [ DOI: doi:10.1021/acschembio.1c00732 Pubmed: 35316014 ]
- 30s ribosomal protein s19 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein thx (3 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s10 (11 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s18 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s9 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s12 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s13 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s15 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s3 (26 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s20 (11 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s8 (15 kDa, Protein from Thermus thermophilus HB8)
- 16s ribosomal rna (493 kDa, RNA from Thermus thermophilus HB8)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s11 (13 kDa, Protein from Thermus thermophilus HB8)
- Ribosomal rna small subunit methyltransferase a (33 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal subunit (Complex from Thermus thermophilus HB8)
- 30s ribosomal with bound ksga, a rna methyltransferase (710 kDa, Complex)
- 30s ribosomal protein s7 (18 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s16 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s5 (17 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s4 (24 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s17 (12 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Thermus thermophilus HB8)
- Ksga (Complex from Bacillus subtilis (strain 168))
- 30s ribosomal protein s2 (29 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s6 (11 kDa, Protein from Thermus thermophilus HB8)
T.thermophilus 30S ribosome with KsgA, class K4
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7v2o
Q-score: 0.466
Singh J, Raina R, Vinothkumar KR, Anand R
ACS Chem Biol (2022) 17 pp. 829-839 [ DOI: doi:10.1021/acschembio.1c00732 Pubmed: 35316014 ]
- 30s ribosomal protein s19 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein thx (3 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s10 (11 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s18 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s9 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s12 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s13 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s15 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s3 (26 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s20 (11 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s8 (15 kDa, Protein from Thermus thermophilus HB8)
- 16s ribosomal rna (493 kDa, RNA from Thermus thermophilus HB8)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s11 (13 kDa, Protein from Thermus thermophilus HB8)
- Ribosomal rna small subunit methyltransferase a (33 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal subunit (Complex from Thermus thermophilus HB8)
- 30s ribosomal with bound ksga, a rna methyltransferase (740 kDa, Complex)
- 30s ribosomal protein s7 (18 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s16 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s5 (17 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s4 (24 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s17 (12 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Thermus thermophilus HB8)
- Ksga (Complex from Bacillus subtilis (strain 168))
- 30s ribosomal protein s2 (29 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s6 (11 kDa, Protein from Thermus thermophilus HB8)
T.thermophilus 30S ribosome with KsgA, class K5
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7v2p
Q-score: 0.53
Singh J, Raina R, Vinothkumar KR, Anand R
ACS Chem Biol (2022) 17 pp. 829-839 [ DOI: doi:10.1021/acschembio.1c00732 Pubmed: 35316014 ]
- 30s ribosomal subunit (Complex from Thermus thermophilus HB8)
- 30s ribosomal protein s11 (13 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s8 (15 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s6 (11 kDa, Protein from Thermus thermophilus HB8)
- 16s ribosomal rna (493 kDa, RNA from Thermus thermophilus HB8)
- 30s ribosomal protein s19 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s17 (12 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s10 (11 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s16 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s13 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal with bound ksga, a rna methyltransferase (720 kDa, Complex)
- 30s ribosomal protein s9 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s12 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s15 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein thx (3 kDa, Protein from Thermus thermophilus HB8)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s7 (18 kDa, Protein from Thermus thermophilus HB8)
- Ksga (Complex from Bacillus subtilis (strain 168))
- 30s ribosomal protein s5 (17 kDa, Protein from Thermus thermophilus HB8)
- Ribosomal rna small subunit methyltransferase a (33 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s18 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s2 (29 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s4 (24 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s20 (11 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s3 (26 kDa, Protein from Thermus thermophilus HB8)
T.thermophilus 30S ribosome with KsgA, class K6
Resolution: 3.24 Å
EM Method: Single-particle
Fitted PDBs: 7v2q
Q-score: 0.486
Singh J, Raina R, Vinothkumar KR, Anand R
ACS Chem Biol (2022) 17 pp. 829-839 [ DOI: doi:10.1021/acschembio.1c00732 Pubmed: 35316014 ]
- 30s ribosomal subunit (Complex from Thermus thermophilus HB8)
- 30s ribosomal protein s11 (13 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s8 (15 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s6 (11 kDa, Protein from Thermus thermophilus HB8)
- 16s ribosomal rna (493 kDa, RNA from Thermus thermophilus HB8)
- 30s ribosomal protein s19 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal with bound ksga, a rna methyltransferase (740 kDa, Complex)
- 30s ribosomal protein s17 (12 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s10 (11 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s16 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s13 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s9 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s12 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s15 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein thx (3 kDa, Protein from Thermus thermophilus HB8)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s7 (18 kDa, Protein from Thermus thermophilus HB8)
- Ksga (Complex from Bacillus subtilis (strain 168))
- 30s ribosomal protein s5 (17 kDa, Protein from Thermus thermophilus HB8)
- Ribosomal rna small subunit methyltransferase a (33 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s18 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s2 (29 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s4 (24 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s20 (11 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s3 (26 kDa, Protein from Thermus thermophilus HB8)
Bacterial 30S ribosomal subunit assembly complex state B (body domain)
Resolution: 3.93 Å
EM Method: Single-particle
Fitted PDBs: 7afo
Q-score: 0.354
Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Lopez-Alonso JP, Lavin JL, Kaminishi T, Capuni R, Dhimole N, de Astigarraga E, Gil-Carton D, Fucini P, Connell SR
Sci Adv (2021) 7 [ DOI: doi:10.1126/sciadv.abf7547 Pubmed: 34088665 ]
- Bacterial 30s ribosomal subunit assembly complex state b (body domain) (Complex from Escherichia coli)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli)
- Bacterial 30s ribosomal subunit assembly complex state b (body domain) (Complex)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
- Ribosome maturation factor rimp (16 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli)
- Ribosomal rna small subunit methyltransferase a (30 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- 16srrna (body domain of the 30s ribosome) (499 kDa, RNA from Escherichia coli)
Ribosomal methyltransferase KsgA bound to small ribosomal subunit
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7o5h
Q-score: 0.503
Stephan NC, Ries AB, Boehringer D, Ban N
Nucleic Acids Res (2021) 49 pp. 6389-6398 [ DOI: doi:10.1093/nar/gkab430 Pubmed: 34086932 ]
- 30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
- Ksga bound to bacterial ribosomal small subunit 30s (Complex from Escherichia coli)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s6, fully modified isoform (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
- Ribosomal rna small subunit methyltransferase a (27 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s18 (6 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s2 (25 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- 16s rrna (312 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s21 (6 kDa, Protein from Escherichia coli)