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sample_name:"Ribosome-recycling factor, mitochondrial"

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EMD-12568

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55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E)

Release date: June 2, 2021
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 7nsi
Q-score: 0.228

Kummer E, Schubert KN, Schoenhut T, Scaiola A, Ban N

Mol Cell (2021) 81 pp. 2566-2582.e6 [ Pubmed: 33878294 DOI: doi:10.1016/j.molcel.2021.03.042 ]

Sample:

39s ribosomal protein l21, mitochondrial isoform d (23 kDa, Protein from Pig)
Mitochondrial ribosomal protein l57 (12 kDa, Protein from Pig)
39s ribosomal protein l11, mitochondrial isoform a (20 kDa, Protein from Pig)
39s ribosomal protein l33, mitochondrial (7 kDa, Protein from Pig)
Mitochondrial ribosomal protein l4 (33 kDa, Protein from Pig)
39s ribosomal protein l28, mitochondrial (30 kDa, Protein from Pig)
Ict1 (43 kDa, Protein from Pig)
Mitochondrial ribosomal protein l40 (24 kDa, Protein from Pig)
39s ribosomal protein l50, mitochondrial (22 kDa, Protein from Pig)
Mitochondrial ribosomal protein l55 (15 kDa, Protein from Pig)
39s ribosomal protein l17, mitochondrial (19 kDa, Protein from Pig)
Mitochondrial ribosomal protein l47 (30 kDa, Protein from Pig)
Guanosine-5'-monophosphate (363 Da, Ligand)
39s ribosomal protein l20, mitochondrial isoform 1 (17 kDa, Protein from Pig)
Mitochondrial ribosomal protein l41 (15 kDa, Protein from Pig)
Ribosome-recycling factor, mitochondrial (Complex from Homo sapiens)
Death associated protein 3 (46 kDa, Protein from Pig)
Unknown (1 kDa, Protein from Pig)
Water (18 Da, Ligand)
39s ribosomal protein l37, mitochondrial (47 kDa, Protein from Pig)
39s ribosomal protein s30, mitochondrial (49 kDa, Protein from Pig)
39s ribosomal protein l43, mitochondrial isoform x2 (17 kDa, Protein from Pig)
39s ribosomal protein l27, mitochondrial (15 kDa, Protein from Pig)
Mitoribosomal protein us12m, mrps12 (15 kDa, Protein from Pig)
55s mammalian mitochondrial ribosome with mtrrf (pre) and trna(p/e) (Complex)
39s ribosomal protein l23, mitochondrial (17 kDa, Protein from Pig)
55s mammalian mitochondrial ribosome (Complex from Sus scrofa)
Coiled-coil-helix-coiled-coil-helix domain containing 1 (13 kDa, Protein from Pig)
28s ribosomal protein s26, mitochondrial (23 kDa, Protein from Pig)
Bl32m (21 kDa, Protein from Pig)
39s ribosomal protein l10, mitochondrial isoform a (29 kDa, Protein from Pig)
39s ribosomal protein l35, mitochondrial (21 kDa, Protein from Pig)
Mitochondrial ribosomal protein l58 (23 kDa, Protein from Pig)
39s ribosomal protein l52, mitochondrial (13 kDa, Protein from Pig)
39s ribosomal protein l24, mitochondrial isoform x1 (24 kDa, Protein from Pig)
39s ribosomal protein l48, mitochondrial (29 kDa, Protein from Pig)
Pentatricopeptide repeat domain 3,pentatricopeptide repeat domain 3,ms39,pentatricopeptide repeat domain 3,pentatricopeptide repeat domain 3 (76 kDa, Protein from Pig)
39s ribosomal protein l9, mitochondrial (30 kDa, Protein from Pig)
Mitochondrial ribosomal protein s27 (51 kDa, Protein from Pig)
39s ribosomal protein l19, mitochondrial (33 kDa, Protein from Pig)
28s ribosomal protein s24, mitochondrial (18 kDa, Protein from Pig)
28s ribosomal protein s18c, mitochondrial isoform 1 (16 kDa, Protein from Pig)
Mitochondrial ribosomal protein s23 (21 kDa, Protein from Pig)
39s ribosomal protein l16, mitochondrial (28 kDa, Protein from Pig)
Us17m (14 kDa, Protein from Pig)
39s ribosomal protein l22, mitochondrial (24 kDa, Protein from Pig)
Mitochondrial ribosomal protein s22 (43 kDa, Protein from Pig)
39s ribosomal protein l13, mitochondrial (20 kDa, Protein from Pig)
Mitochondrial ribosomal protein s18a (22 kDa, Protein from Pig)
Mitochondrial ribosomal protein s11 (20 kDa, Protein from Pig)
28s ribosomal protein s7, mitochondrial (28 kDa, Protein from Pig)
28s ribosomal protein s35, mitochondrial isoform 1 (37 kDa, Protein from Pig)
Mitochondrial ribosomal protein s34 (25 kDa, Protein from Pig)
Tgs domain-containing protein (38 kDa, Protein from Pig)
Mitochondrial ribosomal protein l45 (35 kDa, Protein from Pig)
Ribosomal_l2_c domain-containing protein (33 kDa, Protein from Pig)
Mitochondrial ribosomal protein l12 (21 kDa, Protein from Pig)
28s ribosomal protein s14, mitochondrial (15 kDa, Protein from Pig)
Guanosine-5'-triphosphate (523 Da, Ligand)
39s ribosomal protein l49, mitochondrial (18 kDa, Protein from Pig)
Aurora kinase a interacting protein 1 (22 kDa, Protein from Pig)
39s ribosomal protein l30, mitochondrial (18 kDa, Protein from Pig)
39s ribosomal protein l44, mitochondrial (37 kDa, Protein from Pig)
39s ribosomal protein l34, mitochondrial (10 kDa, Protein from Pig)
39s ribosomal protein l38, mitochondrial (44 kDa, Protein from Pig)
Ml42 (16 kDa, Protein from Pig)
Magnesium ion (24 Da, Ligand)
Ribosomal protein (10 kDa, Protein from Pig)
28s ribosomal protein s31, mitochondrial (44 kDa, Protein from Pig)
39s ribosomal protein l18, mitochondrial isoform 1 (20 kDa, Protein from Pig)
Ribosome-recycling factor, mitochondrial (28 kDa, Protein from Homo sapiens)
12s rrna (308 kDa, RNA from Pig)
39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Pig)
28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Pig)
28s ribosomal protein s5, mitochondrial isoform x2 (48 kDa, Protein from Pig)
Mitochondrial ribosomal protein s33 (12 kDa, Protein from Pig)
28s ribosomal protein s28, mitochondrial (21 kDa, Protein from Pig)
Ml53 (12 kDa, Protein from Pig)
28s ribosomal protein s10, mitochondrial (23 kDa, Protein from Pig)
Ul14m (15 kDa, Protein from Pig)
39s ribosomal protein l54, mitochondrial (15 kDa, Protein from Pig)
Cp trnaphe (23 kDa, RNA from Pig)
39s ribosomal protein l46, mitochondrial (32 kDa, Protein from Pig)
28s ribosomal protein s9, mitochondrial (45 kDa, Protein from Pig)
Spermine (202 Da, Ligand)
39s ribosomal protein l51, mitochondrial (15 kDa, Protein from Pig)
Zinc ion (65 Da, Ligand)
28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Pig)
Interferon alpha-inducible protein 6 (19 kDa, Protein from Pig)
28s ribosomal protein s2, mitochondrial (31 kDa, Protein from Pig)
Mrna (1 kDa, RNA from Pig)
28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Pig)
Trna (p/e) (21 kDa, RNA from Pig)
28s ribosomal protein s15, mitochondrial (27 kDa, Protein from Pig)
39s ribosomal protein l59, mitochondrial (25 kDa, Protein from Pig)
16s rrna (504 kDa, RNA from Pig)
Mitochondrial ribosomal protein s6 (30 kDa, Protein from Pig)

[Show more]

EMD-23096

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Cryo-EM structure of the human 55S mitoribosome-RRFmt complex.

Release date: May 12, 2021
Resolution: 3.49 Å
EM Method: Single-particle
Fitted PDBs: 7l08
Q-score: 0.4

Koripella RK, Deep A, Agrawal EK, Keshavan P, Banavali NK, Agrawal RK

Nat Commun (2021) 12 pp. 3607-3607 [ DOI: doi:10.1038/s41467-021-23726-4 Pubmed: 34127662 ]

Sample:

28s ribosomal protein s25, mitochondrial (20 kDa, Protein from Human)
39s ribosomal protein l48, mitochondrial (21 kDa, Protein from Human)
39s ribosomal protein l49, mitochondrial (19 kDa, Protein from Human)
Ribosome-recycling factor, mitochondrial (22 kDa, Protein from Human)
Growth arrest and dna damage-inducible proteins-interacting protein 1 (25 kDa, Protein from Human)
39s ribosomal protein l32, mitochondrial (21 kDa, Protein from Human)
Mitochondrial ribosomal protein l18, isoform cra_b (20 kDa, Protein from Human)
39s ribosomal protein l21, mitochondrial (22 kDa, Protein from Human)
39s ribosomal protein l55, mitochondrial (15 kDa, Protein from Human)
39s ribosomal protein l41, mitochondrial (15 kDa, Protein from Human)
28s ribosomal protein s9, mitochondrial (45 kDa, Protein from Human)
28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Human)
28s ribosomal protein s7, mitochondrial (28 kDa, Protein from Human)
28s ribosomal protein s17, mitochondrial (14 kDa, Protein from Human)
P-site finger (5 kDa, Protein from Homo sapiens)
28s ribosomal protein s2, mitochondrial (33 kDa, Protein from Human)
Human mitochondrial ribosome-ef-g1 complex (Complex from Homo sapiens)
39s ribosomal protein l16, mitochondrial (28 kDa, Protein from Human)
Aurora kinase a-interacting protein (22 kDa, Protein from Human)
Cdna flj76418, highly similar to homo sapiens mitochondrial ribosomal protein l52 (mrpl52), transcript variant 1, mrna (13 kDa, Protein from Human)
28s ribosomal protein s27, mitochondrial (47 kDa, Protein from Human)
Ribosomal protein 63, mitochondrial (12 kDa, Protein from Human)
28s ribosomal protein s5, mitochondrial (48 kDa, Protein from Human)
39s ribosomal protein l53, mitochondrial (12 kDa, Protein from Human)
28s ribosomal protein s34, mitochondrial (25 kDa, Protein from Human)
28s ribosomal protein s22, mitochondrial (41 kDa, Protein from Human)
28s ribosomal protein s6, mitochondrial (14 kDa, Protein from Human)
39s ribosomal protein l11, mitochondrial (20 kDa, Protein from Human)
28s ribosomal protein s31, mitochondrial (45 kDa, Protein from Human)
39s ribosomal protein l36, mitochondrial (11 kDa, Protein from Human)
28s ribosomal protein s18c, mitochondrial (15 kDa, Protein from Human)
Guanosine-5'-diphosphate (443 Da, Ligand)
Coiled-coil-helix-coiled-coil-helix domain-containing protein 1 (13 kDa, Protein from Human)
39s ribosomal protein l17, mitochondrial (20 kDa, Protein from Human)
28s ribosomal protein s28, mitochondrial (20 kDa, Protein from Human)
39s ribosomal protein l24, mitochondrial (24 kDa, Protein from Human)
39s ribosomal protein l46, mitochondrial (31 kDa, Protein from Human)
39s ribosomal protein l2, mitochondrial (33 kDa, Protein from Human)
39s ribosomal protein l3, mitochondrial (38 kDa, Protein from Human)
39s ribosomal protein l13, mitochondrial (20 kDa, Protein from Human)
39s ribosomal protein l14, mitochondrial (15 kDa, Protein from Human)
39s ribosomal protein l19, mitochondrial (33 kDa, Protein from Human)
39s ribosomal protein l27, mitochondrial (16 kDa, Protein from Human)
16s rrna (500 kDa, RNA from Homo sapiens)
39s ribosomal protein l12, mitochondrial (21 kDa, Protein from Human)
39s ribosomal protein l37, mitochondrial (48 kDa, Protein from Human)
28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Human)
39s ribosomal protein l30, mitochondrial (18 kDa, Protein from Human)
28s ribosomal protein s11, mitochondrial (20 kDa, Protein from Human)
39s ribosomal protein l38, mitochondrial (44 kDa, Protein from Human)
39s ribosomal protein l39, mitochondrial (38 kDa, Protein from Human)
39s ribosomal protein l51, mitochondrial (15 kDa, Protein from Human)
39s ribosomal protein s18a, mitochondrial (22 kDa, Protein from Human)
39s ribosomal protein l54, mitochondrial (15 kDa, Protein from Human)
Pentatricopeptide repeat domain-containing protein 3, mitochondrial (78 kDa, Protein from Human)
39s ribosomal protein l28, mitochondrial (30 kDa, Protein from Human)
Magnesium ion (24 Da, Ligand)
39s ribosomal protein l9, mitochondrial (30 kDa, Protein from Human)
28s ribosomal protein s26, mitochondrial (24 kDa, Protein from Human)
39s ribosomal protein l44, mitochondrial (37 kDa, Protein from Human)
39s ribosomal protein s30, mitochondrial (50 kDa, Protein from Human)
28s ribosomal protein s35, mitochondrial (36 kDa, Protein from Human)
39s ribosomal protein l23, mitochondrial (17 kDa, Protein from Human)
Peptidyl-trna hydrolase ict1, mitochondrial (23 kDa, Protein from Human)
39s ribosomal protein l42, mitochondrial (16 kDa, Protein from Human)
39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Human)
28s ribosomal protein s24, mitochondrial (19 kDa, Protein from Human)
39s ribosomal protein l35, mitochondrial (21 kDa, Protein from Human)
28s ribosomal protein s15, mitochondrial (29 kDa, Protein from Human)
28s ribosomal protein s29, mitochondrial (45 kDa, Protein from Human)
39s ribosomal protein l4, mitochondrial (34 kDa, Protein from Human)
28s ribosomal protein s12, mitochondrial (15 kDa, Protein from Human)
39s ribosomal protein l34, mitochondrial (10 kDa, Protein from Human)
39s ribosomal protein l33, mitochondrial (7 kDa, Protein from Human)
39s ribosomal protein l45, mitochondrial (35 kDa, Protein from Human)
39s ribosomal protein l22, mitochondrial (24 kDa, Protein from Human)
28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Human)
28s ribosomal protein s10, mitochondrial (23 kDa, Protein from Human)
Zinc ion (65 Da, Ligand)
12s rrna (306 kDa, RNA from Homo sapiens)
28s ribosomal protein s14, mitochondrial (15 kDa, Protein from Human)
28s ribosomal protein s23, mitochondrial (21 kDa, Protein from Human)
39s ribosomal protein l40, mitochondrial (24 kDa, Protein from Human)
39s ribosomal protein l10, mitochondrial (29 kDa, Protein from Human)
39s ribosomal protein l43, mitochondrial (17 kDa, Protein from Human)
Trnaval (23 kDa, RNA from Homo sapiens)
28s ribosomal protein s33, mitochondrial (12 kDa, Protein from Human)
39s ribosomal protein l20, mitochondrial (17 kDa, Protein from Human)
39s ribosomal protein l50, mitochondrial (18 kDa, Protein from Human)
39s ribosomal protein l47, mitochondrial (29 kDa, Protein from Human)

[Show more]

EMD-23121

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Cryo-EM structure of the human 39S mitoribosomal subunit in complex with RRFmt and EF-G2mt.

Release date: May 12, 2021
Resolution: 3.15 Å
EM Method: Single-particle
Fitted PDBs: 7l20
Q-score: 0.472

Koripella RK, Deep A, Agrawal EK, Keshavan P, Banavali NK, Agrawal RK

Nat Commun (2021) 12 pp. 3607-3607 [ DOI: doi:10.1038/s41467-021-23726-4 Pubmed: 34127662 ]

Sample:

Ribosomal protein 63, mitochondrial (12 kDa, Protein from Human)
39s ribosomal protein l35, mitochondrial (21 kDa, Protein from Human)
39s ribosomal protein l48, mitochondrial (21 kDa, Protein from Human)
39s ribosomal protein l53, mitochondrial (12 kDa, Protein from Human)
39s ribosomal protein l49, mitochondrial (19 kDa, Protein from Human)
Ribosome-recycling factor, mitochondrial (22 kDa, Protein from Human)
39s ribosomal protein l30, mitochondrial (18 kDa, Protein from Human)
16s rrna mitochondrial (500 kDa, RNA from Homo sapiens)
39s ribosomal protein l11, mitochondrial (20 kDa, Protein from Human)
39 s p-site finger (5 kDa, Protein from Homo sapiens)
Growth arrest and dna damage-inducible proteins-interacting protein 1 (25 kDa, Protein from Human)
Cryo-em structure of mammalian mitochondrial ribosome complex with mtefg-2 and mtrrf (Complex from Homo sapiens)
39s ribosomal protein l32, mitochondrial (21 kDa, Protein from Human)
39s ribosomal protein l4, mitochondrial (34 kDa, Protein from Human)
Mitochondrial ribosomal protein l18, isoform cra_b (20 kDa, Protein from Human)
39s ribosomal protein l38, mitochondrial (44 kDa, Protein from Human)
39s ribosomal protein l36, mitochondrial (11 kDa, Protein from Human)
39s ribosomal protein l21, mitochondrial (22 kDa, Protein from Human)
39s ribosomal protein l34, mitochondrial (10 kDa, Protein from Human)
39s ribosomal protein l39, mitochondrial (38 kDa, Protein from Human)
39s ribosomal protein l51, mitochondrial (15 kDa, Protein from Human)
39s ribosomal protein l33, mitochondrial (7 kDa, Protein from Human)
Trnaval (23 kDa, RNA from Homo sapiens)
39s ribosomal protein l55, mitochondrial (15 kDa, Protein from Human)
39s ribosomal protein l45, mitochondrial (35 kDa, Protein from Human)
39s ribosomal protein l41, mitochondrial (15 kDa, Protein from Human)
39s ribosomal protein l22, mitochondrial (24 kDa, Protein from Human)
39s ribosomal protein l17, mitochondrial (20 kDa, Protein from Human)
Zinc ion (65 Da, Ligand)
39s ribosomal protein s18a, mitochondrial (22 kDa, Protein from Human)
39s ribosomal protein l54, mitochondrial (15 kDa, Protein from Human)
39s ribosomal protein l24, mitochondrial (24 kDa, Protein from Human)
39s ribosomal protein l46, mitochondrial (31 kDa, Protein from Human)
39s ribosomal protein l40, mitochondrial (24 kDa, Protein from Human)
39s ribosomal protein l2, mitochondrial (33 kDa, Protein from Human)
39s ribosomal protein l10, mitochondrial (29 kDa, Protein from Human)
39s ribosomal protein l3, mitochondrial (38 kDa, Protein from Human)
39s ribosomal protein l28, mitochondrial (30 kDa, Protein from Human)
Ribosome-releasing factor 2, mitochondrial (77 kDa, Protein from Human)
Magnesium ion (24 Da, Ligand)
39s ribosomal protein l13, mitochondrial (20 kDa, Protein from Human)
39s ribosomal protein l9, mitochondrial (30 kDa, Protein from Human)
39s ribosomal protein l44, mitochondrial (37 kDa, Protein from Human)
39s ribosomal protein s30, mitochondrial (50 kDa, Protein from Human)
39s ribosomal protein l43, mitochondrial (17 kDa, Protein from Human)
39s ribosomal protein l42, mitochondrial (16 kDa, Protein from Human)
39s ribosomal protein l14, mitochondrial (15 kDa, Protein from Human)
39s ribosomal protein l19, mitochondrial (33 kDa, Protein from Human)
39s ribosomal protein l20, mitochondrial (17 kDa, Protein from Human)
39s ribosomal protein l27, mitochondrial (16 kDa, Protein from Human)
39s ribosomal protein l50, mitochondrial (18 kDa, Protein from Human)
39s ribosomal protein l16, mitochondrial (28 kDa, Protein from Human)
39s ribosomal protein l23, mitochondrial (17 kDa, Protein from Human)
Cdna flj76418, highly similar to homo sapiens mitochondrial ribosomal protein l52 (mrpl52), transcript variant 1, mrna (13 kDa, Protein from Human)
Peptidyl-trna hydrolase ict1, mitochondrial (23 kDa, Protein from Human)
39s ribosomal protein l12, mitochondrial (21 kDa, Protein from Human)
Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
39s ribosomal protein l37, mitochondrial (48 kDa, Protein from Human)
39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Human)
39s ribosomal protein l47, mitochondrial (29 kDa, Protein from Human)

[Show more]

EMD-12567

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39S mammalian mitochondrial large ribosomal subunit with mtRRF (post) and mtEFG2

Release date: May 5, 2021
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7nsh
Q-score: 0.49

Kummer E, Schubert KN, Schoenhut T, Scaiola A, Ban N

Mol Cell (2021) 81 pp. 2566-2582.e6 [ Pubmed: 33878294 DOI: doi:10.1016/j.molcel.2021.03.042 ]

Sample:

Bl32m (21 kDa, Protein from Pig)
Mitochondrial ribosomal protein l45 (35 kDa, Protein from Pig)
Mitochondrial ribosomal protein l12 (21 kDa, Protein from Pig)
Mitochondrial ribosomal protein l20 (17 kDa, Protein from Pig)
Mitochondrial ribosomal protein l50 (22 kDa, Protein from Pig)
Mitochondrial ribosomal protein l37 (47 kDa, Protein from Pig)
Mitochondrial ribosomal protein l57 (12 kDa, Protein from Pig)
Ml53 (12 kDa, Protein from Pig)
Ul24m (24 kDa, Protein from Pig)
Mitochondrial ribosomal protein l9 (30 kDa, Protein from Pig)
Mitochondrial ribosomal protein l35 (21 kDa, Protein from Pig)
Ul14m (15 kDa, Protein from Pig)
Ml62 (ict1) (23 kDa, Protein from Pig)
39s ribosomal protein l48, mitochondrial (29 kDa, Protein from Pig)
Ml54 (15 kDa, Protein from Pig)
Ml64 (25 kDa, Protein from Pig)
Cp trnaphe (23 kDa, RNA from Pig)
Mitochondrial ribosomal protein l4 (33 kDa, Protein from Pig)
Ict1 (43 kDa, Protein from Pig)
Ul15m (33 kDa, Protein from Pig)
Mitochondrial ribosomal protein l40 (24 kDa, Protein from Pig)
Mitochondrial ribosomal protein l34 (10 kDa, Protein from Pig)
Ul22m (24 kDa, Protein from Pig)
39s mammalian mitochondrial large ribosomal subunit with mtrrf (post) and mtefg2 (Complex)
Spermine (202 Da, Ligand)
Bl31m (15 kDa, Protein from Pig)
Mitochondrial ribosomal protein l46 (32 kDa, Protein from Pig)
Ml52 (13 kDa, Protein from Pig)
Mitochondrial ribosomal protein l47 (30 kDa, Protein from Pig)
Ribosome-releasing factor 2, mitochondrial (83 kDa, Protein from Homo sapiens)
Guanosine-5'-monophosphate (363 Da, Ligand)
Zinc ion (65 Da, Ligand)
Mtrrf (post) and mtefg2 (Complex from Homo sapiens)
Mitochondrial ribosomal protein l51 (15 kDa, Protein from Pig)
Mitochondrial ribosomal protein l27 (15 kDa, Protein from Pig)
Mitochondrial ribosomal protein l41 (15 kDa, Protein from Pig)
Ul13m (20 kDa, Protein from Pig)
Ml42 (16 kDa, Protein from Pig)
Mitochondrial ribosomal protein l28 (30 kDa, Protein from Pig)
Mitochondrial ribosomal protein l11 (20 kDa, Protein from Pig)
Water (18 Da, Ligand)
Mitochondrial ribosomal protein l10 (29 kDa, Protein from Pig)
Mitochondrial ribosomal protein l38 (44 kDa, Protein from Pig)
Ul2m (33 kDa, Protein from Pig)
Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
Bl17m (19 kDa, Protein from Pig)
Ul30m (18 kDa, Protein from Pig)
Mitochondrial ribosomal protein l39 (38 kDa, Protein from Pig)
Magnesium ion (24 Da, Ligand)
Ul23m (17 kDa, Protein from Pig)
Mitochondrial ribosomal protein s18a (22 kDa, Protein from Pig)
Bl33m (7 kDa, Protein from Pig)
39s ribosomal protein s30, mitochondrial (49 kDa, Protein from Pig)
Mitochondrial ribosomal protein l18 (20 kDa, Protein from Pig)
Ribosomal protein (10 kDa, Protein from Pig)
39s mammalian mitochondrial large ribosomal subunit (Complex from Sus scrofa)
Mitochondrial ribosomal protein l21 (23 kDa, Protein from Pig)
Ribosome-recycling factor, mitochondrial (28 kDa, Protein from Homo sapiens)
16s rrna (504 kDa, RNA from Pig)
Mrpl34 (18 kDa, Protein from Pig)
Mitochondrial ribosomal protein l19 (33 kDa, Protein from Pig)
Mitochondrial ribosomal protein l43 (17 kDa, Protein from Pig)
Ml44 (37 kDa, Protein from Pig)
Ul16m (28 kDa, Protein from Pig)

[Show more]

EMD-11390

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Human mitochondrial ribosome in complex with ribosome recycling factor

Release date: Oct. 14, 2020
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 6zs9
Q-score: 0.322

Aibara S, Singh V, Modelska A, Amunts A

eLife (2020) 9 [ DOI: doi:10.7554/eLife.58362 Pubmed: 32812867 ]

Sample:

39s ribosomal protein l36, mitochondrial (11 kDa, Protein from Homo sapiens)
39s ribosomal protein l21, mitochondrial (22 kDa, Protein from Homo sapiens)
Quinupristin (1 kDa, Protein from synthetic construct)
39s ribosomal protein l24, mitochondrial (24 kDa, Protein from Homo sapiens)
28s ribosomal protein s11, mitochondrial (20 kDa, Protein from Homo sapiens)
39s ribosomal protein l37, mitochondrial (48 kDa, Protein from Homo sapiens)
39s ribosomal protein l55, mitochondrial (15 kDa, Protein from Homo sapiens)
28s ribosomal protein s29, mitochondrial (39 kDa, Protein from Homo sapiens)
28s ribosomal protein s6, mitochondrial (14 kDa, Protein from Homo sapiens)
28s ribosomal protein s12, mitochondrial (15 kDa, Protein from Homo sapiens)
12s rrna (305 kDa, RNA from Homo sapiens)
39s ribosomal protein l12, mitochondrial (21 kDa, Protein from Homo sapiens)
39s ribosomal protein l39, mitochondrial (38 kDa, Protein from Homo sapiens)
Pentatricopeptide repeat domain-containing protein 3, mitochondrial (72 kDa, Protein from Homo sapiens)
39s ribosomal protein l32, mitochondrial (21 kDa, Protein from Homo sapiens)
39s ribosomal protein l44, mitochondrial (37 kDa, Protein from Homo sapiens)
39s ribosomal protein l45, mitochondrial (35 kDa, Protein from Homo sapiens)
Human mitochondrial ribosome bound to mrna and a-, p- and e-site trnas (Complex from Homo sapiens)
39s ribosomal protein l30, mitochondrial (18 kDa, Protein from Homo sapiens)
39s ribosomal protein l28, mitochondrial (30 kDa, Protein from Homo sapiens)
39s ribosomal protein l9, mitochondrial (30 kDa, Protein from Homo sapiens)
39s ribosomal protein s30, mitochondrial (50 kDa, Protein from Homo sapiens)
39s ribosomal protein l46, mitochondrial (31 kDa, Protein from Homo sapiens)
Coiled-coil-helix-coiled-coil-helix domain-containing protein 1 (13 kDa, Protein from Homo sapiens)
Ribosome-recycling factor, mitochondrial (21 kDa, Protein from Homo sapiens)
16s rrna (500 kDa, RNA from Homo sapiens)
39s ribosomal protein l19, mitochondrial (33 kDa, Protein from Homo sapiens)
39s ribosomal protein l23, mitochondrial (17 kDa, Protein from Homo sapiens)
Guanosine-5'-triphosphate (523 Da, Ligand)
28s ribosomal protein s25, mitochondrial (20 kDa, Protein from Homo sapiens)
39s ribosomal protein l47, mitochondrial (29 kDa, Protein from Homo sapiens)
39s ribosomal protein l34, mitochondrial (10 kDa, Protein from Homo sapiens)
39s ribosomal protein l42, mitochondrial (16 kDa, Protein from Homo sapiens)
Mt-trnaval (23 kDa, RNA from Homo sapiens)
28s ribosomal protein s10, mitochondrial (23 kDa, Protein from Homo sapiens)
28s ribosomal protein s28, mitochondrial (20 kDa, Protein from Homo sapiens)
39s ribosomal protein l4, mitochondrial (34 kDa, Protein from Homo sapiens)
39s ribosomal protein s18a, mitochondrial (22 kDa, Protein from Homo sapiens)
39s ribosomal protein l20, mitochondrial (17 kDa, Protein from Homo sapiens)
39s ribosomal protein l50, mitochondrial (18 kDa, Protein from Homo sapiens)
28s ribosomal protein s33, mitochondrial (12 kDa, Protein from Homo sapiens)
Mitochondrial ribosomal protein l18, isoform cra_b (20 kDa, Protein from Homo sapiens)
28s ribosomal protein s31, mitochondrial (45 kDa, Protein from Homo sapiens)
39s ribosomal protein l3, mitochondrial (38 kDa, Protein from Homo sapiens)
39s ribosomal protein l38, mitochondrial (44 kDa, Protein from Homo sapiens)
28s ribosomal protein s22, mitochondrial (41 kDa, Protein from Homo sapiens)
28s ribosomal protein s5, mitochondrial (48 kDa, Protein from Homo sapiens)
39s ribosomal protein l49, mitochondrial (19 kDa, Protein from Homo sapiens)
Cdna flj76418, highly similar to homo sapiens mitochondrial ribosomal protein l52 (mrpl52), transcript variant 1, mrna (13 kDa, Protein from Homo sapiens)
39s ribosomal protein l2, mitochondrial (33 kDa, Protein from Homo sapiens)
28s ribosomal protein s18c, mitochondrial (15 kDa, Protein from Homo sapiens)
28s ribosomal protein s15, mitochondrial (29 kDa, Protein from Homo sapiens)
28s ribosomal protein s7, mitochondrial (28 kDa, Protein from Homo sapiens)
39s ribosomal protein l35, mitochondrial (21 kDa, Protein from Homo sapiens)
39s ribosomal protein l51, mitochondrial (15 kDa, Protein from Homo sapiens)
39s ribosomal protein l14, mitochondrial (15 kDa, Protein from Homo sapiens)
28s ribosomal protein s26, mitochondrial (24 kDa, Protein from Homo sapiens)
39s ribosomal protein l53, mitochondrial (12 kDa, Protein from Homo sapiens)
39s ribosomal protein l16, mitochondrial (28 kDa, Protein from Homo sapiens)
Zinc ion (65 Da, Ligand)
28s ribosomal protein s35, mitochondrial (36 kDa, Protein from Homo sapiens)
39s ribosomal protein l54, mitochondrial (15 kDa, Protein from Homo sapiens)
39s ribosomal protein l33, mitochondrial (7 kDa, Protein from Homo sapiens)
39s ribosomal protein l43, mitochondrial (23 kDa, Protein from Homo sapiens)
39s ribosomal protein l11, mitochondrial (20 kDa, Protein from Homo sapiens)
39s ribosomal protein l48, mitochondrial (23 kDa, Protein from Homo sapiens)
28s ribosomal protein s17, mitochondrial (14 kDa, Protein from Homo sapiens)
39s ribosomal protein l40, mitochondrial (24 kDa, Protein from Homo sapiens)
28s ribosomal protein s14, mitochondrial (15 kDa, Protein from Homo sapiens)
Growth arrest and dna damage-inducible proteins-interacting protein 1 (23 kDa, Protein from Homo sapiens)
Magnesium ion (24 Da, Ligand)
5-(2-diethylamino-ethanesulfonyl)-21-hydroxy-10-isopropyl-11,19-dimethyl-9,26-dioxa-3,15,28-triaza-tricyclo[23.2.1.00,255]octacosa-1(27),12,17,19,25(28)-pentaene-2,8,14,23-tetraone (690 Da, Ligand)
39s ribosomal protein l17, mitochondrial (20 kDa, Protein from Homo sapiens)
39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Homo sapiens)
28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Homo sapiens)
28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Homo sapiens)
Ribosomal protein 63, mitochondrial (12 kDa, Protein from Homo sapiens)
39s ribosomal protein l22, mitochondrial (24 kDa, Protein from Homo sapiens)
28s ribosomal protein s24, mitochondrial (19 kDa, Protein from Homo sapiens)
39s ribosomal protein l27, mitochondrial (16 kDa, Protein from Homo sapiens)
Aurora kinase a-interacting protein (22 kDa, Protein from Homo sapiens)
39s ribosomal protein l13, mitochondrial (20 kDa, Protein from Homo sapiens)
39s ribosomal protein l10, mitochondrial (29 kDa, Protein from Homo sapiens)
Peptidyl-trna hydrolase ict1, mitochondrial (23 kDa, Protein from Homo sapiens)
28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Homo sapiens)
28s ribosomal protein s23, mitochondrial (21 kDa, Protein from Homo sapiens)
39s ribosomal protein l41, mitochondrial (15 kDa, Protein from Homo sapiens)
28s ribosomal protein s34, mitochondrial (25 kDa, Protein from Homo sapiens)
28s ribosomal protein s2, mitochondrial (33 kDa, Protein from Homo sapiens)
28s ribosomal protein s27, mitochondrial (47 kDa, Protein from Homo sapiens)
28s ribosomal protein s9, mitochondrial (45 kDa, Protein from Homo sapiens)

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EMD-0514

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Structural insights into unique features of the human mitochondrial ribosome recycling

Release date: April 17, 2019
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6nu2
Q-score: 0.246

Koripella RK, Sharma MR, Risteff P, Keshavan P, Agrawal RK

PNAS (2019) 116 pp. 8283-8288 [ DOI: doi:10.1073/pnas.1815675116 Pubmed: 30962385 ]

Sample:

Ribosome-recycling factor, mitochondrial (22 kDa, Protein from Human)
39s ribosomal protein l48, mitochondrial (16 kDa, Protein from Human)
39s ribosomal protein l2, mitochondrial (26 kDa, Protein from Human)
28s ribosomal protein s33, mitochondrial (10 kDa, Protein from Human)
39s ribosomal protein l33, mitochondrial (6 kDa, Protein from Human)
28s ribosomal protein s17, mitochondrial (12 kDa, Protein from Human)
28s ribosomal protein s23, mitochondrial (14 kDa, Protein from Human)
39s ribosomal protein l54, mitochondrial (3 kDa, Protein from Human)
39s ribosomal protein l32, mitochondrial (12 kDa, Protein from Human)
28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Human)
39s ribosomal protein l22, mitochondrial (19 kDa, Protein from Human)
39s ribosomal protein l10, mitochondrial (19 kDa, Protein from Human)
39s ribosomal protein l44, mitochondrial (32 kDa, Protein from Human)
39s ribosomal protein l16, mitochondrial (23 kDa, Protein from Human)
28s ribosomal protein s5, mitochondrial (38 kDa, Protein from Human)
Structural insights into unique features of the human mitochondrial ribosome bound with mtrrf -class-1 (Complex from Homo sapiens)
28s ribosomal protein s31, mitochondrial (12 kDa, Protein from Human)
Pentatricopeptide repeat domain-containing protein 3, mitochondrial (50 kDa, Protein from Human)
Mt-trnaval (17 kDa, RNA from Human)
28s ribosomal protein s16, mitochondrial (13 kDa, Protein from Human)
39s ribosomal protein l9, mitochondrial (11 kDa, Protein from Human)
39s ribosomal protein l50, mitochondrial (11 kDa, Protein from Human)
39s ribosomal protein l3, mitochondrial (34 kDa, Protein from Human)
39s ribosomal protein l34, mitochondrial (5 kDa, Protein from Human)
39s ribosomal protein l30, mitochondrial (13 kDa, Protein from Human)
39s ribosomal protein l47, mitochondrial (21 kDa, Protein from Human)
39s ribosomal protein l14, mitochondrial (12 kDa, Protein from Human)
39s ribosomal protein l28, mitochondrial (28 kDa, Protein from Human)
Coiled-coil-helix-coiled-coil-helix domain-containing protein 1 (13 kDa, Protein from Human)
28s ribosomal protein s35, mitochondrial (31 kDa, Protein from Human)
28s ribosomal protein s25, mitochondrial (19 kDa, Protein from Human)
39s ribosomal protein s30, mitochondrial (45 kDa, Protein from Human)
39s ribosomal protein s18a, mitochondrial (18 kDa, Protein from Human)
28s ribosomal protein s24, mitochondrial (15 kDa, Protein from Human)
Ribosomal protein 63, mitochondrial (11 kDa, Protein from Human)
28s ribosomal protein s29, mitochondrial (39 kDa, Protein from Human)
Aurora kinase a-interacting protein (8 kDa, Protein from Human)
28s ribosomal protein s18c, mitochondrial (11 kDa, Protein from Human)
39s ribosomal protein l15, mitochondrial (32 kDa, Protein from Human)
28s ribosomal protein s14, mitochondrial (12 kDa, Protein from Human)
12s rrna (296 kDa, RNA from Human)
39s ribosomal protein l46, mitochondrial (27 kDa, Protein from Human)
28s ribosomal protein s26, mitochondrial (20 kDa, Protein from Human)
Peptidyl-trna hydrolase ict1, mitochondrial (18 kDa, Protein from Human)
39s ribosomal protein l27, mitochondrial (12 kDa, Protein from Human)
Growth arrest and dna damage-inducible proteins-interacting protein 1 (15 kDa, Protein from Human)
28s ribosomal protein s10, mitochondrial (14 kDa, Protein from Human)
39s ribosomal protein l23, mitochondrial (13 kDa, Protein from Human)
39s ribosomal protein l42, mitochondrial (12 kDa, Protein from Human)
28s ribosomal protein s11, mitochondrial (14 kDa, Protein from Human)
39s ribosomal protein l55, mitochondrial (5 kDa, Protein from Human)
E-site trna (589 Da, RNA from Human)
28s ribosomal protein s2, mitochondrial (25 kDa, Protein from Human)
28s ribosomal protein s15, mitochondrial (19 kDa, Protein from Human)
39s ribosomal protein l40, mitochondrial (11 kDa, Protein from Human)
39s ribosomal protein l49, mitochondrial (15 kDa, Protein from Human)
39s ribosomal protein l35, mitochondrial (11 kDa, Protein from Human)
39s ribosomal protein l45, mitochondrial (20 kDa, Protein from Human)
28s ribosomal protein s7, mitochondrial (24 kDa, Protein from Human)
28s ribosomal protein s34, mitochondrial (24 kDa, Protein from Human)
39s ribosomal protein l38, mitochondrial (41 kDa, Protein from Human)
39s ribosomal protein l17, mitochondrial (17 kDa, Protein from Human)
28s ribosomal protein s6, mitochondrial (13 kDa, Protein from Human)
28s ribosomal protein s12, mitochondrial (12 kDa, Protein from Human)
Magnesium ion (24 Da, Ligand)
39s ribosomal protein l4, mitochondrial (28 kDa, Protein from Human)
39s ribosomal protein l20, mitochondrial (16 kDa, Protein from Human)
39s ribosomal protein l13, mitochondrial (20 kDa, Protein from Human)
16s rrna (472 kDa, RNA from Human)
39s ribosomal protein l21, mitochondrial (17 kDa, Protein from Human)
28s ribosomal protein s9, mitochondrial (38 kDa, Protein from Human)
28s ribosomal protein s22, mitochondrial (28 kDa, Protein from Human)
39s ribosomal protein l51, mitochondrial (11 kDa, Protein from Human)
39s ribosomal protein l41, mitochondrial (14 kDa, Protein from Human)
39s ribosomal protein l36, mitochondrial (4 kDa, Protein from Human)
39s ribosomal protein l11, mitochondrial (15 kDa, Protein from Human)
39s ribosomal protein l37, mitochondrial (45 kDa, Protein from Human)
39s ribosomal protein l53, mitochondrial (9 kDa, Protein from Human)
39s ribosomal protein l39, mitochondrial (33 kDa, Protein from Human)
Zinc ion (65 Da, Ligand)
Unknown protein/protein extension (2 kDa, Protein from Human)
39s ribosomal protein l18, mitochondrial (15 kDa, Protein from Human)
39s ribosomal protein l43, mitochondrial (16 kDa, Protein from Human)
39s ribosomal protein l19, mitochondrial (25 kDa, Protein from Human)
39s ribosomal protein l52, mitochondrial (9 kDa, Protein from Human)
39s ribosomal protein l24, mitochondrial (23 kDa, Protein from Human)
28s ribosomal protein s27, mitochondrial (42 kDa, Protein from Human)
28s ribosomal protein s18b, mitochondrial (21 kDa, Protein from Human)
28s ribosomal protein s28, mitochondrial (10 kDa, Protein from Human)

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