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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"SPERMINE" AND xref_links:"interpro" AND author_name:"Prange C"

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EMD-0229

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Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the complete mitoribosome

Release date: Oct. 3, 2018
Resolution: 7.8 Å
EM Method: Single-particle
Fitted PDBs: 6hiv
Q-score: 0.116

Ramrath DJF, Niemann M, Leibundgut M, Bieri P, Prange C, Horn EK, Leitner A, Boehringer D, Schneider A, Ban N

Science (2018) 362 [ DOI: doi:10.1126/science.aau7735 Pubmed: 30213880 ]

Sample:

Ms34 (22 kDa, Protein from Trypanosoma brucei brucei)
Unk (613 Da, Protein from Trypanosoma brucei brucei)
Ml40 (33 kDa, Protein from Trypanosoma brucei brucei)
Bl20m (24 kDa, Protein from Trypanosoma brucei brucei)
Ml93 (17 kDa, Protein from Trypanosoma brucei brucei)
Ms43 (48 kDa, Protein from Trypanosoma brucei brucei)
Ms35 (98 kDa, Protein from Trypanosoma brucei brucei)
Bl21m (20 kDa, Protein from Trypanosoma brucei brucei)
Unk (1 kDa, Protein from Trypanosoma brucei brucei)
Us8m (32 kDa, Protein from Trypanosoma brucei brucei)
Bl12m (3 kDa, Protein from Trypanosoma brucei brucei)
Ml82 (29 kDa, Protein from Trypanosoma brucei brucei)
Ms57 (45 kDa, Protein from Trypanosoma brucei brucei)
Us3m (9 kDa, Protein from Trypanosoma brucei brucei)
Bl32m (9 kDa, Protein from Trypanosoma brucei brucei)
Unk (4 kDa, Protein from Trypanosoma brucei brucei)
Ml41 (22 kDa, Protein from Trypanosoma brucei brucei)
Bl28m (28 kDa, Protein from Trypanosoma brucei brucei)
Ms69 (21 kDa, Protein from Trypanosoma brucei brucei)
Unk (2 kDa, Protein from Trypanosoma brucei brucei)
Ms54 (72 kDa, Protein from Trypanosoma brucei brucei)
Spermine (202 Da, Ligand)
Us55m (50 kDa, Protein from Trypanosoma brucei brucei)
Unk (954 Da, Protein from Trypanosoma brucei brucei)
Ms29 (57 kDa, Protein from Trypanosoma brucei brucei)
Uridine 5'-triphosphate (484 Da, Ligand)
Serine (105 Da, Ligand)
Ml87 (22 kDa, Protein from Trypanosoma brucei brucei)
Unk (1 kDa, Protein from Trypanosoma brucei brucei)
Bs6m (18 kDa, Protein from Trypanosoma brucei brucei)
Bs12m (23 kDa, Protein from Trypanosoma brucei brucei)
Ml71 (50 kDa, Protein from Trypanosoma brucei brucei)
Ms26 (51 kDa, Protein from Trypanosoma brucei brucei)
Ml38 (58 kDa, Protein from Trypanosoma brucei brucei)
Ul11m (40 kDa, Protein from Trypanosoma brucei brucei)
Ms74 (8 kDa, Protein from Trypanosoma brucei brucei)
Unk (1 kDa, Protein from Trypanosoma brucei brucei)
Ml75 (39 kDa, Protein from Trypanosoma brucei brucei)
Ul23m (28 kDa, Protein from Trypanosoma brucei brucei)
Ms72 (19 kDa, Protein from Trypanosoma brucei brucei)
Ml78 (35 kDa, Protein from Trypanosoma brucei brucei)
The complete t. brucei mitoribosome with its small and large subunits (4 MDa, Complex from Trypanosoma brucei brucei)
Ml84 (24 kDa, Protein from Trypanosoma brucei brucei)
Unk (15 kDa, Protein from Trypanosoma brucei brucei)
Ml81 (29 kDa, Protein from Trypanosoma brucei brucei)
Ml100 (10 kDa, Protein from Trypanosoma brucei brucei)
Ms37 (24 kDa, Protein from Trypanosoma brucei brucei)
Unk (3 kDa, Protein from Trypanosoma brucei brucei)
Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
Ml67 (93 kDa, Protein from Trypanosoma brucei brucei)
Ms73 (11 kDa, Protein from Trypanosoma brucei brucei)
Bl27m (21 kDa, Protein from Trypanosoma brucei brucei)
Ml46 (33 kDa, Protein from Trypanosoma brucei brucei)
Ml97 (12 kDa, Protein from Trypanosoma brucei brucei)
Spermidine (145 Da, Ligand)
Ms38 (28 kDa, Protein from Trypanosoma brucei brucei)
Us11m (37 kDa, Protein from Trypanosoma brucei brucei)
Ul30m (25 kDa, Protein from Trypanosoma brucei brucei)
Ms71 (20 kDa, Protein from Trypanosoma brucei brucei)
Us15m (50 kDa, Protein from Trypanosoma brucei brucei)
Ml63 (18 kDa, Protein from Trypanosoma brucei brucei)
Unk (3 kDa, Protein from Trypanosoma brucei brucei)
Bl36m (21 kDa, Protein from Trypanosoma brucei brucei)
Bl9m (31 kDa, Protein from Trypanosoma brucei brucei)
Ml79 (33 kDa, Protein from Trypanosoma brucei brucei)
Ml42 (21 kDa, Protein from Trypanosoma brucei brucei)
Mt-if-3 (41 kDa, Protein from Trypanosoma brucei brucei)
Ml74 (39 kDa, Protein from Trypanosoma brucei brucei)
Us14m (19 kDa, Protein from Trypanosoma brucei brucei)
Ml83 (25 kDa, Protein from Trypanosoma brucei brucei)
Ms63 (31 kDa, Protein from Trypanosoma brucei brucei)
Ms58 (35 kDa, Protein from Trypanosoma brucei brucei)
Bl12m (1 kDa, Protein from Trypanosoma brucei brucei)
Ml96 (16 kDa, Protein from Trypanosoma brucei brucei)
Unk (2 kDa, Protein from Trypanosoma brucei brucei)
50s ribosomal protein l17, putative (35 kDa, Protein from Trypanosoma brucei brucei)
Ms64 (30 kDa, Protein from Trypanosoma brucei brucei)
Us10m (94 kDa, Protein from Trypanosoma brucei brucei)
Ms66 (29 kDa, Protein from Trypanosoma brucei brucei)
Ms47 (137 kDa, Protein from Trypanosoma brucei brucei)
Bs18m (36 kDa, Protein from Trypanosoma brucei brucei)
Us12 (10 kDa, Protein from Trypanosoma brucei brucei)
Bl33m (13 kDa, Protein from Trypanosoma brucei brucei)
Ml92 (20 kDa, Protein from Trypanosoma brucei brucei)
Ul10m (20 kDa, Protein from Trypanosoma brucei brucei)
Ms61 (33 kDa, Protein from Trypanosoma brucei brucei)
Ms56 (47 kDa, Protein from Trypanosoma brucei brucei)
Ml99 (12 kDa, Protein from Trypanosoma brucei brucei)
Bl12m (2 kDa, Protein from Trypanosoma brucei brucei)
Guanosine-5'-triphosphate (523 Da, Ligand)
Ms91 (20 kDa, Protein from Trypanosoma brucei brucei)
Ms23 (36 kDa, Protein from Trypanosoma brucei brucei)
Ul3m (55 kDa, Protein from Trypanosoma brucei brucei)
Ml43 (31 kDa, Protein from Trypanosoma brucei brucei)
Ml49 (24 kDa, Protein from Trypanosoma brucei brucei)
Ml98 (12 kDa, Protein from Trypanosoma brucei brucei)
Ml90 (22 kDa, Protein from Trypanosoma brucei brucei)
Unk (1 kDa, Protein from Trypanosoma brucei brucei)
Ms33 (21 kDa, Protein from Trypanosoma brucei brucei)
Unk (3 kDa, Protein from Trypanosoma brucei brucei)
Ms67 (30 kDa, Protein from Trypanosoma brucei brucei)
Us19m (28 kDa, Protein from Trypanosoma brucei brucei)
Ms53 (75 kDa, Protein from Trypanosoma brucei brucei)
Ms62 (32 kDa, Protein from Trypanosoma brucei brucei)
Ms22 (73 kDa, Protein from Trypanosoma brucei brucei)
Ul24m (43 kDa, Protein from Trypanosoma brucei brucei)
Unk (869 Da, Protein from Trypanosoma brucei brucei)
Zinc ion (65 Da, Ligand)
Ml88 (22 kDa, Protein from Trypanosoma brucei brucei)
Ml89 (22 kDa, Protein from Trypanosoma brucei brucei)
Bl35m (21 kDa, Protein from Trypanosoma brucei brucei)
Ml76 (39 kDa, Protein from Trypanosoma brucei brucei)
Unk (443 Da, Protein from Trypanosoma brucei brucei)
Water (18 Da, Ligand)
Us17m (35 kDa, Protein from Trypanosoma brucei brucei)
Ms70 (21 kDa, Protein from Trypanosoma brucei brucei)
Ms49 (137 kDa, Protein from Trypanosoma brucei brucei)
Ml72 (49 kDa, Protein from Trypanosoma brucei brucei)
Ul4m (53 kDa, Protein from Trypanosoma brucei brucei)
Ms51 (95 kDa, Protein from Trypanosoma brucei brucei)
Ml53 (35 kDa, Protein from Trypanosoma brucei brucei)
Ml77 (42 kDa, Protein from Trypanosoma brucei brucei)
Ms59 (35 kDa, Protein from Trypanosoma brucei brucei)
12s rrna (377 kDa, RNA from Trypanosoma brucei brucei)
Ms65 (30 kDa, Protein from Trypanosoma brucei brucei)
Ms50 (131 kDa, Protein from Trypanosoma brucei brucei)
Ml73 (41 kDa, Protein from Trypanosoma brucei brucei)
Ml68 (60 kDa, Protein from Trypanosoma brucei brucei)
Ml95 (17 kDa, Protein from Trypanosoma brucei brucei)
Magnesium ion (24 Da, Ligand)
Bl31m (21 kDa, Protein from Trypanosoma brucei brucei)
Ms34 (28 kDa, Protein from Trypanosoma brucei brucei)
Ms60 (34 kDa, Protein from Trypanosoma brucei brucei)
Ms52 (84 kDa, Protein from Trypanosoma brucei brucei)
Ml85 (18 kDa, Protein from Trypanosoma brucei brucei)
Ms55 (66 kDa, Protein from Trypanosoma brucei brucei)
9s rrna (198 kDa, RNA from Trypanosoma brucei brucei)
Bl19m (16 kDa, Protein from Trypanosoma brucei brucei)
Ml70 (62 kDa, Protein from Trypanosoma brucei brucei)
Ul15m (43 kDa, Protein from Trypanosoma brucei brucei)
Ul22m (32 kDa, Protein from Trypanosoma brucei brucei)
Ul29m (54 kDa, Protein from Trypanosoma brucei brucei)
50s ribosomal protein l13, putative (24 kDa, Protein from Trypanosoma brucei brucei)
Unk (698 Da, Protein from Trypanosoma brucei brucei)
Us9m (50 kDa, Protein from Trypanosoma brucei brucei)
50s ribosomal protein l16, putative (19 kDa, Protein from Trypanosoma brucei brucei)
Ml68 (28 kDa, Protein from Trypanosoma brucei brucei)
Ms48 (201 kDa, Protein from Trypanosoma brucei brucei)
Ml80 (34 kDa, Protein from Trypanosoma brucei brucei)
Ml86 (22 kDa, Protein from Trypanosoma brucei brucei)
Ml94 (17 kDa, Protein from Trypanosoma brucei brucei)
Unk (528 Da, Protein from Trypanosoma brucei brucei)
Ml52 (29 kDa, Protein from Trypanosoma brucei brucei)
Ml69 (59 kDa, Protein from Trypanosoma brucei brucei)
Ms68 (26 kDa, Protein from Trypanosoma brucei brucei)
Bs16m (22 kDa, Protein from Trypanosoma brucei brucei)
Ms42 (29 kDa, Protein from Trypanosoma brucei brucei)

[Show more]

EMD-0230

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Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the complete small mitoribosomal subunit in complex with mt-IF-3

Release date: Sept. 26, 2018
Resolution: 3.37 Å
EM Method: Single-particle
Fitted PDBs: 6hiw
Q-score: 0.488

Ramrath DJF, Niemann M, Leibundgut M, Bieri P, Prange C, Horn EK, Leitner A, Boehringer D, Schneider A, Ban N

Science (2018) 362 [ DOI: doi:10.1126/science.aau7735 Pubmed: 30213880 ]

Sample:

Ms71 (20 kDa, Protein from Trypanosoma brucei brucei)
Unknown protein (2 kDa, Protein from Trypanosoma brucei brucei)
Ms63 (31 kDa, Protein from Trypanosoma brucei brucei)
Ms43 (48 kDa, Protein from Trypanosoma brucei brucei)
Ms35 (98 kDa, Protein from Trypanosoma brucei brucei)
Ms72 (19 kDa, Protein from Trypanosoma brucei brucei)
Ms53 (75 kDa, Protein from Trypanosoma brucei brucei)
Ms70 (21 kDa, Protein from Trypanosoma brucei brucei)
Ms65 (30 kDa, Protein from Trypanosoma brucei brucei)
Ms60 (34 kDa, Protein from Trypanosoma brucei brucei)
Ms62 (32 kDa, Protein from Trypanosoma brucei brucei)
Ms47 (137 kDa, Protein from Trypanosoma brucei brucei)
Us8m (32 kDa, Protein from Trypanosoma brucei brucei)
Ms37 (24 kDa, Protein from Trypanosoma brucei brucei)
Guanosine-5'-triphosphate (523 Da, Ligand)
Ms55 (66 kDa, Protein from Trypanosoma brucei brucei)
Ms48 (201 kDa, Protein from Trypanosoma brucei brucei)
Us5m (50 kDa, Protein from Trypanosoma brucei brucei)
Ms69 (21 kDa, Protein from Trypanosoma brucei brucei)
Ms41 (22 kDa, Protein from Trypanosoma brucei brucei)
Ms52 (85 kDa, Protein from Trypanosoma brucei brucei)
Ms42 (29 kDa, Protein from Trypanosoma brucei brucei)
Magnesium ion (24 Da, Ligand)
Ms74 (8 kDa, Protein from Trypanosoma brucei brucei)
Ms34 (28 kDa, Protein from Trypanosoma brucei brucei)
Spermidine (145 Da, Ligand)
Unknown protein (4 kDa, Protein from Trypanosoma brucei brucei)
Us12m (10 kDa, Protein from Trypanosoma brucei brucei)
Us3m (9 kDa, Protein from Trypanosoma brucei brucei)
Unknown protein (443 Da, Protein from Trypanosoma brucei brucei)
Ms66 (29 kDa, Protein from Trypanosoma brucei brucei)
Ms23 (36 kDa, Protein from Trypanosoma brucei brucei)
Us11m (37 kDa, Protein from Trypanosoma brucei brucei)
Ms38 (28 kDa, Protein from Trypanosoma brucei brucei)
Ms50 (131 kDa, Protein from Trypanosoma brucei brucei)
Ms59 (35 kDa, Protein from Trypanosoma brucei brucei)
Ms51 (95 kDa, Protein from Trypanosoma brucei brucei)
Us15m (50 kDa, Protein from Trypanosoma brucei brucei)
Ms33 (21 kDa, Protein from Trypanosoma brucei brucei)
Bs21m (23 kDa, Protein from Trypanosoma brucei brucei)
Ms64 (30 kDa, Protein from Trypanosoma brucei brucei)
Unknown protein (698 Da, Protein from Trypanosoma brucei brucei)
Spermine (202 Da, Ligand)
Us19m (28 kDa, Protein from Trypanosoma brucei brucei)
Mt-if-3 (41 kDa, Protein from Trypanosoma brucei brucei)
Ms22 (73 kDa, Protein from Trypanosoma brucei brucei)
Ms54 (72 kDa, Protein from Trypanosoma brucei brucei)
Zinc ion (65 Da, Ligand)
Us14m (19 kDa, Protein from Trypanosoma brucei brucei)
Ms61 (33 kDa, Protein from Trypanosoma brucei brucei)
Unknown protein (3 kDa, Protein from Trypanosoma brucei brucei)
Small subunit of the t. brucei mitoribosome in complex with mt-if-3 (2 MDa, Complex from Trypanosoma brucei brucei)
Us9m (50 kDa, Protein from Trypanosoma brucei brucei)
Ms29 (57 kDa, Protein from Trypanosoma brucei brucei)
Ms68 (26 kDa, Protein from Trypanosoma brucei brucei)
Uridine 5'-triphosphate (484 Da, Ligand)
Ms56 (47 kDa, Protein from Trypanosoma brucei brucei)
9s rrna (198 kDa, RNA from Trypanosoma brucei brucei)
Ms57 (45 kDa, Protein from Trypanosoma brucei brucei)
Ms67 (30 kDa, Protein from Trypanosoma brucei brucei)
Bs16m (22 kDa, Protein from Trypanosoma brucei brucei)
Bs6m (18 kDa, Protein from Trypanosoma brucei brucei)
Us17m (35 kDa, Protein from Trypanosoma brucei brucei)
Unknown protein (613 Da, Protein from Trypanosoma brucei brucei)
Ms58 (35 kDa, Protein from Trypanosoma brucei brucei)
Water (18 Da, Ligand)
Ms49 (137 kDa, Protein from Trypanosoma brucei brucei)
Us10m (94 kDa, Protein from Trypanosoma brucei brucei)
Ms26 (51 kDa, Protein from Trypanosoma brucei brucei)
Ms73 (11 kDa, Protein from Trypanosoma brucei brucei)
Bs18m (36 kDa, Protein from Trypanosoma brucei brucei)

[Show more]

EMD-0232

Download Map 3D View

Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the body of the small mitoribosomal subunit in complex with mt-IF-3

Release date: Sept. 26, 2018
Resolution: 3.27 Å
EM Method: Single-particle
Fitted PDBs: 6hiy
Q-score: 0.516

Ramrath DJF, Niemann M, Leibundgut M, Bieri P, Prange C, Horn EK, Leitner A, Boehringer D, Schneider A, Ban N

Science (2018) 362 [ DOI: doi:10.1126/science.aau7735 Pubmed: 30213880 ]

Sample:

Ms63 (31 kDa, Protein from Trypanosoma brucei brucei)
Ms43 (48 kDa, Protein from Trypanosoma brucei brucei)
Ms65 (30 kDa, Protein from Trypanosoma brucei brucei)
Ms60 (34 kDa, Protein from Trypanosoma brucei brucei)
Unknown protein (698 Da, Protein from Trypanosoma brucei brucei)
Ms62 (32 kDa, Protein from Trypanosoma brucei brucei)
Us8m (32 kDa, Protein from Trypanosoma brucei brucei)
Ms37 (24 kDa, Protein from Trypanosoma brucei brucei)
9s rrna (198 kDa, RNA from Trypanosoma brucei brucei)
Ms48 (201 kDa, Protein from Trypanosoma brucei brucei)
Unknown protein (4 kDa, Protein from Trypanosoma brucei brucei)
Ms23 (36 kDa, Protein from Trypanosoma brucei brucei)
Ms41 (22 kDa, Protein from Trypanosoma brucei brucei)
Ms42 (29 kDa, Protein from Trypanosoma brucei brucei)
Magnesium ion (24 Da, Ligand)
Ms74 (8 kDa, Protein from Trypanosoma brucei brucei)
Ms34 (28 kDa, Protein from Trypanosoma brucei brucei)
Spermidine (145 Da, Ligand)
Us12m (10 kDa, Protein from Trypanosoma brucei brucei)
Unknown protein (3 kDa, Protein from Trypanosoma brucei brucei)
Ms66 (29 kDa, Protein from Trypanosoma brucei brucei)
Ms38 (28 kDa, Protein from Trypanosoma brucei brucei)
Us11m (37 kDa, Protein from Trypanosoma brucei brucei)
Us21m (23 kDa, Protein from Trypanosoma brucei brucei)
Body of the t. brucei mitoribosome small subunit in complex with mt-if-3 (1 MDa, Complex from Trypanosoma brucei brucei)
Ms59 (35 kDa, Protein from Trypanosoma brucei brucei)
Ms51 (95 kDa, Protein from Trypanosoma brucei brucei)
Us15m (50 kDa, Protein from Trypanosoma brucei brucei)
Ms64 (30 kDa, Protein from Trypanosoma brucei brucei)
Ms55m (50 kDa, Protein from Trypanosoma brucei brucei)
Spermine (202 Da, Ligand)
Mt-if-3 (41 kDa, Protein from Trypanosoma brucei brucei)
Ms22 (73 kDa, Protein from Trypanosoma brucei brucei)
Zinc ion (65 Da, Ligand)
Ms61 (33 kDa, Protein from Trypanosoma brucei brucei)
Us9m (50 kDa, Protein from Trypanosoma brucei brucei)
Ms68 (26 kDa, Protein from Trypanosoma brucei brucei)
Ms56 (47 kDa, Protein from Trypanosoma brucei brucei)
Bs16m (22 kDa, Protein from Trypanosoma brucei brucei)
Bs6m (18 kDa, Protein from Trypanosoma brucei brucei)
Us17m (35 kDa, Protein from Trypanosoma brucei brucei)
Unknown protein (2 kDa, Protein from Trypanosoma brucei brucei)
Ms73 (11 kDa, Protein from Trypanosoma brucei brucei)
Ms26 (51 kDa, Protein from Trypanosoma brucei brucei)
Ms47 (137 kDa, Protein from Trypanosoma brucei brucei)
Bs18m (36 kDa, Protein from Trypanosoma brucei brucei)

[Show more]

Sort by: Download

Showing 1 - 3 of 3. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [3]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Field: