Structure of the yeast TRAPPII-Rab11/Ypt32 complex in the closed/closed state (composite structure)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7u05
Q-score: 0.452
Sci Adv (2022) 8 pp. eabn7446-eabn7446 [ Pubmed: 35559680 DOI: doi:10.1126/sciadv.abn7446 ]
- Trappii complex bound to rab11/ypt32 (1 MDa, Complex from Saccharomyces cerevisiae)
- Trafficking protein particle complex subunit 23 (24 kDa, Protein from baker's yeast)
- Gtp-binding protein ypt32/ypt11 (25 kDa, Protein from Saccharomyces cerevisiae)
- Trafficking protein particle complex subunit 31 (31 kDa, Protein from baker's yeast)
- Trafficking protein particle complex ii-specific subunit 130 (20 kDa, Protein from Baker's yeast)
- Trafficking protein particle complex subunit 20 (19 kDa, Protein from baker's yeast)
- Palmitic acid (256 Da, Ligand)
- Trafficking protein particle complex subunit 33 (30 kDa, Protein from baker's yeast)
- Trafficking protein particle complex ii-specific subunit 65 (63 kDa, Protein from baker's yeast)
- Trafficking protein particle complex subunit bet3 (22 kDa, Protein from baker's yeast)
- Trafficking protein particle complex subunit bet5 (18 kDa, Protein from baker's yeast)
- Trafficking protein particle complex ii-specific subunit 130 (128 kDa, Protein from baker's yeast)
- Trafficking protein particle complex ii-specific subunit 65 (17 kDa, Protein from Baker's yeast)
- Trafficking protein particle complex ii-specific subunit 120 (147 kDa, Protein from baker's yeast)
- Trapp-associated protein tca17 (17 kDa, Protein from baker's yeast)
Structure of the yeast TRAPPII-Rab11/Ypt32 complex in the closed/open state (composite structure)
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7u06
Q-score: 0.412
Sci Adv (2022) 8 pp. eabn7446-eabn7446 [ Pubmed: 35559680 DOI: doi:10.1126/sciadv.abn7446 ]
- Trappii complex bound to rab11/ypt32 (1 MDa, Complex from Saccharomyces cerevisiae)
- Trafficking protein particle complex subunit 23 (24 kDa, Protein from baker's yeast)
- Gtp-binding protein ypt32/ypt11 (25 kDa, Protein from Saccharomyces cerevisiae)
- Trafficking protein particle complex subunit 31 (31 kDa, Protein from baker's yeast)
- Palmitic acid (256 Da, Ligand)
- Trafficking protein particle complex subunit 20 (19 kDa, Protein from baker's yeast)
- Trafficking protein particle complex subunit 33 (30 kDa, Protein from baker's yeast)
- Trafficking protein particle complex ii-specific subunit 65 (63 kDa, Protein from baker's yeast)
- Trafficking protein particle complex subunit bet3 (22 kDa, Protein from baker's yeast)
- Trafficking protein particle complex subunit bet5 (18 kDa, Protein from baker's yeast)
- Trafficking protein particle complex ii-specific subunit 130 (128 kDa, Protein from baker's yeast)
- Trafficking protein particle complex ii-specific subunit 130 (24 kDa, Protein from Baker's yeast)
- Trafficking protein particle complex ii-specific subunit 65 (17 kDa, Protein from Baker's yeast)
- Trafficking protein particle complex ii-specific subunit 120 (147 kDa, Protein from baker's yeast)
- Trapp-associated protein tca17 (17 kDa, Protein from baker's yeast)
Resolution: 4.18 Å
EM Method: Single-particle
Fitted PDBs: 7e2c
Q-score: 0.357
Mi C, Zhang L, Huang G, Shao G, Yang F, You X, Dong MQ, Sun S, Sui SF
Sci Adv (2022) 8 pp. eabi5603-eabi5603 [ Pubmed: 35080977 DOI: doi:10.1126/sciadv.abi5603 ]
- Trafficking protein particle complex ii-specific subunit 130 (128 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trafficking protein particle complex subunit 33 (30 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trapp-associated protein tca17 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trafficking protein particle complex subunit 31 (31 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trafficking protein particle complex subunit bet3 (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trafficking protein particle complex subunit 23 (24 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trafficking protein particle complex subunit 20 (19 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trafficking protein particle complex subunit bet5 (18 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trafficking protein particle complex ii-specific subunit 120 (147 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trafficking protein particle complex ii-specific subunit 65 (63 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Monomer of trappii (open) (Complex from Saccharomyces cerevisiae)
Resolution: 3.71 Å
EM Method: Single-particle
Fitted PDBs: 7e2d
Q-score: 0.363
Mi C, Zhang L, Huang G, Shao G, Yang F, You X, Dong MQ, Sun S, Sui SF
Sci Adv (2022) 8 pp. eabi5603-eabi5603 [ DOI: doi:10.1126/sciadv.abi5603 Pubmed: 35080977 ]
- Trafficking protein particle complex subunit 20 (19 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trafficking protein particle complex subunit 33 (30 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trafficking protein particle complex ii-specific subunit 65 (63 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trafficking protein particle complex ii-specific subunit 120 (147 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trafficking protein particle complex subunit bet3 (21 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trafficking protein particle complex subunit 23 (24 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trafficking protein particle complex ii-specific subunit 130 (128 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Monomer of trappii (closed). (Cellular component from Saccharomyces cerevisiae)
- Trafficking protein particle complex subunit 31 (31 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trapp-associated protein tca17 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trafficking protein particle complex subunit bet5 (18 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7e8t
Q-score: 0.394
Mi C, Zhang L, Huang G, Shao G, Yang F, You X, Dong MQ, Sun S, Sui SF
Sci Adv (2022) 8 pp. eabi5603-eabi5603 [ DOI: doi:10.1126/sciadv.abi5603 Pubmed: 35080977 ]
- Trafficking protein particle complex subunit 31 (31 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trafficking protein particle complex subunit 33 (30 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trafficking protein particle complex subunit bet3 (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trafficking protein particle complex ii-specific subunit 65 (63 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trafficking protein particle complex ii-specific subunit 120 (147 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Gtp-binding protein ypt32/ypt11 (24 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trafficking protein particle complex subunit bet5 (18 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trafficking protein particle complex subunit 23 (24 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Monomer of ypt32-trappii. (Complex from Saccharomyces cerevisiae)
- Trafficking protein particle complex ii-specific subunit 130 (128 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trapp-associated protein tca17 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trafficking protein particle complex subunit 20 (19 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Resolution: 6.54 Å
EM Method: Single-particle
Fitted PDBs: 7e93
Q-score: 0.153
Mi C, Zhang L, Huang G, Shao G, Yang F, You X, Dong MQ, Sun S, Sui SF
Sci Adv (2022) 8 pp. eabi5603-eabi5603 [ Pubmed: 35080977 DOI: doi:10.1126/sciadv.abi5603 ]
- Trafficking protein particle complex ii-specific subunit 130 (128 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trafficking protein particle complex subunit 33 (30 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trapp-associated protein tca17 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trafficking protein particle complex ii-specific subunit 65 (63 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Intact trappii (state iii). (Complex from Saccharomyces cerevisiae)
- Trafficking protein particle complex ii-specific subunit 120 (147 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trafficking protein particle complex subunit bet3 (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trafficking protein particle complex subunit 23 (24 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trafficking protein particle complex subunit 31 (31 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trafficking protein particle complex subunit bet5 (18 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trafficking protein particle complex subunit 20 (19 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Resolution: 4.31 Å
EM Method: Single-particle
Fitted PDBs: 7ea3
Q-score: 0.241
Mi C, Zhang L, Huang G, Shao G, Yang F, You X, Dong MQ, Sun S, Sui SF
Sci Adv (2022) 8 pp. eabi5603-eabi5603 [ DOI: doi:10.1126/sciadv.abi5603 Pubmed: 35080977 ]
- Trafficking protein particle complex subunit bet3 (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trafficking protein particle complex subunit 33 (30 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trafficking protein particle complex subunit 31 (31 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trafficking protein particle complex ii-specific subunit 65 (63 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Gtp-binding protein ypt32/ypt11 (24 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trafficking protein particle complex subunit bet5 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trafficking protein particle complex subunit 23 (24 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Intact ypt32-trappii (dimer). (Complex from Saccharomyces cerevisiae)
- Trafficking protein particle complex ii-specific subunit 130 (128 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trafficking protein particle complex ii-specific subunit 120 (147 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trapp-associated protein tca17 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Trafficking protein particle complex subunit 20 (19 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Structure of the yeast TRAPPIII-Ypt1(Rab1) complex
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7kmt
Q-score: 0.391
Joiner AM, Phillips BP, Yugandhar K, Sanford EJ, Smolka MB, Yu H, Miller EA, Fromme JC
EMBO J (2021) 40 pp. e107607-e107607 [ Pubmed: 34018207 DOI: doi:10.15252/embj.2020107607 ]
- Gtp-binding protein ypt1 (23 kDa, Protein from Saccharomyces cerevisiae)
- Palmitic acid (256 Da, Ligand)
- Trafficking protein particle complex subunit bet3 (22 kDa, Protein from Saccharomyces cerevisiae)
- Trafficking protein particle complex subunit 20 (19 kDa, Protein from Saccharomyces cerevisiae)
- Trafficking protein particle complex subunit 33 (30 kDa, Protein from Saccharomyces cerevisiae)
- Trafficking protein particle complex subunit 23 (24 kDa, Protein from Saccharomyces cerevisiae)
- Trafficking protein particle complex subunit bet5 (18 kDa, Protein from Saccharomyces cerevisiae)
- Trafficking protein particle complex subunit 31 (31 kDa, Protein from Saccharomyces cerevisiae)
- Trafficking protein particle complex iii-specific subunit 85 (82 kDa, Protein from Saccharomyces cerevisiae)
- Trappiii-ypt1 complex (Complex from Saccharomyces cerevisiae)