CryoEM Structure of Reconstituted V-ATPase, state1
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7fda
Q-score: 0.205
Khan MM, Lee S, Oot RA, Couoh-Cardel S, Kim H, Wilkens S, Roh SH
EMBO J (2021) [ ]
- V-type proton atpase subunit c (44 kDa, Protein from Saccharomyces cerevisiae S288C)
- Yeast vacuolar atpase a subunit (67 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit d (39 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit c'' (22 kDa, Protein from Saccharomyces cerevisiae S288C)
- Fusion of yeast v-type proton atpase subunit h(nt) and human v-type proton atpase subunit h(ct) (53 kDa, Protein from Homo sapiens)
- Yeast vacuolar atpase in rotary state 1 (1 MDa, Complex from Saccharomyces cerevisiae S288c)
- V-type proton atpase subunit f (13 kDa, Protein from Saccharomyces cerevisiae S288C)
- Yeast vacuolar atpase a subunit (95 kDa, Protein from Saccharomyces cerevisiae S288C)
- Yeast vacuolar atpase f subunit (9 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit e (8 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit e (26 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit c (16 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit g (13 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunits (Complex)
- Yeast v-type proton atpase subunit c (Complex from Saccharomyces cerevisiae S288c)
- V-type proton atpase subunit d (29 kDa, Protein from Saccharomyces cerevisiae S288C)
- Chimeric subunit h (Complex from Saccharomyces cerevisiae S288c)
- V0 assembly protein 1 (29 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit b (57 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit c' (17 kDa, Protein from Saccharomyces cerevisiae S288C)
CryoEM Structures of Reconstituted V-ATPase,State2
Resolution: 4.8 Å
EM Method: Single-particle
Fitted PDBs: 7fdb
Q-score: 0.043
Khan MM, Lee S, Oot RA, Couoh-Cardel S, Kim H, Wilkens S, Roh SH
EMBO J (2021) [ ]
- V-type proton atpase subunit c (44 kDa, Protein from Saccharomyces cerevisiae S288C)
- Yeast vacuolar atpase a subunit (67 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit d (39 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit c'' (22 kDa, Protein from Saccharomyces cerevisiae S288C)
- Fusion of yeast v-type proton atpase subunit h(nt) and human v-type proton atpase subunit h(ct) (53 kDa, Protein from Homo sapiens)
- Yeast vacuolar atpase in rotary state 2 (1 MDa, Complex from Saccharomyces cerevisiae S288c)
- V-type proton atpase subunit f (13 kDa, Protein from Saccharomyces cerevisiae S288C)
- Yeast vacuolar atpase a subunit (95 kDa, Protein from Saccharomyces cerevisiae S288C)
- Yeast vacuolar atpase f subunit (9 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit e (8 kDa, Protein from Saccharomyces cerevisiae S288C)
- Yeast vacuolar atpase c subunit (Complex from Saccharomyces cerevisiae S288c)
- V-type proton atpase subunit e (26 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit c (16 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit g (13 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunits (Complex)
- V-type proton atpase subunit d (29 kDa, Protein from Saccharomyces cerevisiae S288C)
- Chimeric subunit h (Complex from Saccharomyces cerevisiae S288c)
- V0 assembly protein 1 (29 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit b (57 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit c' (17 kDa, Protein from Saccharomyces cerevisiae S288C)
CryoEM Structures of Reconstituted V-ATPase, state3
Resolution: 6.6 Å
EM Method: Single-particle
Fitted PDBs: 7fdc
Q-score: 0.069
Khan MM, Lee S, Oot RA, Couoh-Cardel S, Kim H, Wilkens S, Roh SH
EMBO J (2021) [ ]
- Chimeric subunit h (Complex from Saccharomyces cerevisiae S288c)
- V-type proton atpase subunits (Complex)
- V-type proton atpase subunit b (57 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit c (16 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit d (39 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit g (13 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit c'' (22 kDa, Protein from Saccharomyces cerevisiae S288C)
- Yeast vacuolar atpase c subunit (Complex from Saccharomyces cerevisiae S288c)
- V0 assembly protein 1 (29 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit e (26 kDa, Protein from Saccharomyces cerevisiae S288C)
- Yeast vacuolar atpase f subunit (9 kDa, Protein from Saccharomyces cerevisiae S288C)
- Fusion of yeast v-type proton atpase subunit h(nt) and human v-type proton atpase subunit h(ct) (53 kDa, Protein from Homo sapiens)
- Yeast vacuolar atpase a subunit (67 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit f (13 kDa, Protein from Saccharomyces cerevisiae S288C)
- Yeast vacuolar atpase a subunit (95 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit d (29 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit c' (17 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit c (44 kDa, Protein from Saccharomyces cerevisiae S288C)
- Yeast vacuolar atpase in rotary state 3 (1 MDa, Complex from Saccharomyces cerevisiae S288c)
- V-type proton atpase subunit e (8 kDa, Protein from Saccharomyces cerevisiae S288C)
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 6m0r
Q-score: 0.467
Roh SH, Shekhar M, Pintilie G, Chipot C, Wilkens S, Singharoy A, Chiu W
Sci Adv (2020) 6 [ DOI: doi:10.1126/sciadv.abb9605 Pubmed: 33028525 ]
- (6~{e},10~{e},14~{e},18~{e},22~{e},26~{e},30~{r})-2,6,10,14,18,22,26,30-octamethyldotriaconta-2,6,10,14,18,22,26-heptaene (548 Da, Ligand)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- V0 assembly protein 1 (5 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit c'' (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Uncharacterized protein ypr170w-b (7 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit c (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit d (39 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Water (18 Da, Ligand)
- V-type proton atpase subunit c' (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit e (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit a, vacuolar isoform (94 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase vo sub-complex (400 MDa, Complex from Saccharomyces cerevisiae)
- Pyrophosphate (177 Da, Ligand)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6m0s
Q-score: 0.384
Roh SH, Shekhar M, Pintilie G, Chipot C, Wilkens S, Singharoy A, Chiu W
Sci Adv (2020) 6 [ DOI: doi:10.1126/sciadv.abb9605 Pubmed: 33028525 ]
- V-type proton atpase subunit c'' (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V0 assembly protein 1 (5 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit e (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit d (39 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase vo sub-complex (400 MDa, Complex from Saccharomyces cerevisiae)
- V-type proton atpase subunit c' (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit a, vacuolar isoform (94 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Uncharacterized protein ypr170w-b (7 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit c (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Saccharomyces cerevisiae V-ATPase Vph1-VO
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6o7t
Q-score: 0.508
Vasanthakumar T, Bueler SA, Wu D, Beilsten-Edmands V, Robinson CV, Rubinstein JL
PNAS (2019) 116 pp. 7272-7277 [ Pubmed: 30910982 DOI: doi:10.1073/pnas.1814818116 ]
- V-type proton atpase subunit c' (17 kDa, Protein from Saccharomyces cerevisiae)
- Putative protein ypr170w-b (9 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit e (8 kDa, Protein from Saccharomyces cerevisiae)
- V0 assembly protein 1 (29 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit d (39 kDa, Protein from Saccharomyces cerevisiae)
- Saccharomyces cerevisiae v-atpase vph1-vo (Complex from Saccharomyces cerevisiae)
- V-type proton atpase subunit a, vacuolar isoform (98 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit c'' (22 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit c (16 kDa, Protein from Saccharomyces cerevisiae)
Saccharomyces cerevisiae V-ATPase Stv1-VO
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6o7u
Q-score: 0.564
Vasanthakumar T, Bueler SA, Wu D, Beilsten-Edmands V, Robinson CV, Rubinstein JL
PNAS (2019) 116 pp. 7272-7277 [ Pubmed: 30910982 DOI: doi:10.1073/pnas.1814818116 ]
- V0 assembly protein 1 (29 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit c'' (22 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit a, golgi isoform (104 kDa, Protein from Saccharomyces cerevisiae)
- Saccharomyces cerevisiae v-atpase stv1-vo (Complex from Saccharomyces cerevisiae)
- V-type proton atpase subunit e (8 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit c (16 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit c' (17 kDa, Protein from Saccharomyces cerevisiae)
- Putative protein ypr170w-b (9 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit d (39 kDa, Protein from Saccharomyces cerevisiae)
Saccharomyces cerevisiae V-ATPase Stv1-V1VO State 1
Resolution: 6.6 Å
EM Method: Single-particle
Fitted PDBs: 6o7v
Q-score: 0.175
Vasanthakumar T, Bueler SA, Wu D, Beilsten-Edmands V, Robinson CV, Rubinstein JL
PNAS (2019) 116 pp. 7272-7277 [ Pubmed: 30910982 DOI: doi:10.1073/pnas.1814818116 ]
- V-type proton atpase subunit f (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit c (44 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit e (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Vacuolar atp synthase catalytic subunit a (70 kDa, Protein from Saccharomyces cerevisiae (strain RM11-1a))
- Saccharomyces cerevisiae v-atpase stv1-v1vo state 1 (Complex from Saccharomyces cerevisiae)
- V-type proton atpase subunit b (57 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit d (39 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit a, golgi isoform (101 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V0 assembly protein 1 (29 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit c (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit c' (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Putative protein ypr170w-b (9 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit d (29 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit e (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit g (12 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit c'' (22 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit h (54 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Saccharomyces cerevisiae V-ATPase Stv1-V1VO State 2
Resolution: 7.0 Å
EM Method: Single-particle
Fitted PDBs: 6o7w
Q-score: 0.163
Vasanthakumar T, Bueler SA, Wu D, Beilsten-Edmands V, Robinson CV, Rubinstein JL
PNAS (2019) 116 pp. 7272-7277 [ Pubmed: 30910982 DOI: doi:10.1073/pnas.1814818116 ]
- V-type proton atpase subunit f (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit c (44 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit e (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Vacuolar atp synthase catalytic subunit a (70 kDa, Protein from Saccharomyces cerevisiae (strain RM11-1a))
- V-type proton atpase subunit d (39 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit b (57 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Saccharomyces cerevisiae v-atpase stv1-v1vo state 2 (Complex from Saccharomyces cerevisiae)
- V-type proton atpase subunit a, golgi isoform (101 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V0 assembly protein 1 (29 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit c (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit c' (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Putative protein ypr170w-b (9 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit d (29 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit e (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit g (12 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit c'' (22 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit h (54 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Saccharomyces cerevisiae V-ATPase Stv1-V1VO State 3
Resolution: 8.7 Å
EM Method: Single-particle
Fitted PDBs: 6o7x
Q-score: 0.121
Vasanthakumar T, Bueler SA, Wu D, Beilsten-Edmands V, Robinson CV, Rubinstein JL
PNAS (2019) 116 pp. 7272-7277 [ Pubmed: 30910982 DOI: doi:10.1073/pnas.1814818116 ]
- V-type proton atpase subunit f (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Saccharomyces cerevisiae v-atpase stv1-v1vo state 3 (Complex from Saccharomyces cerevisiae)
- V-type proton atpase subunit c (44 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit e (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Vacuolar atp synthase catalytic subunit a (70 kDa, Protein from Saccharomyces cerevisiae (strain RM11-1a))
- V-type proton atpase subunit d (39 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit b (57 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit c (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit a, golgi isoform (101 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V0 assembly protein 1 (29 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit c' (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Putative protein ypr170w-b (9 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit d (29 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit e (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit g (12 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit c'' (22 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit h (54 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))