Electron Microscopy Data Bank

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Rabbit 80S ribosome as it decodes the Sec-UGA codon

Release date: Oct. 19, 2022
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7zjw
Q-score: 0.514

Hilal T, Killam BY, Grozdanovic M, Dobosz-Bartoszek M, Loerke J, Burger J, Mielke T, Copeland PR, Simonovic M, Spahn CMT

Science (2022) 376 pp. 1338-1343 [ DOI: doi:10.1126/science.abg3875 Pubmed: 35709277 ]

Sample:

40s ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein us14 (6 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s30 (14 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein el38 (8 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l34 (13 kDa, Protein from Oryctolagus cuniculus)
Gpx4 secis element (Complex from Rattus norvegicus)
60s ribosomal protein el42 (12 kDa, Protein from Oryctolagus cuniculus)
Ribosomal_l18_c domain-containing protein (34 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein s5 (22 kDa, Protein from Oryctolagus cuniculus)
Ser-trna-sec (Complex from Homo sapiens)
5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
40s ribosomal protein s11 (18 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein es17 (15 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein es21 (9 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l36 (12 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
18s rrna (603 kDa, RNA from Oryctolagus cuniculus)
40s ribosomal protein us9 (19 kDa, Protein from Oryctolagus cuniculus)
Water (18 Da, Ligand)
40s ribosomal protein s9 (22 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein es4 (29 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein sa (32 kDa, Protein from Oryctolagus cuniculus)
80s-selenosome (3 MDa, Complex)
60s ribosomal protein l19 (23 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s3a (30 kDa, Protein from Oryctolagus cuniculus)
Crpv ires (Complex from Cricket paralysis virus)
60s ribosomal protein ul22 (21 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein ul23 (17 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s27a (18 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein el24 (17 kDa, Protein from Oryctolagus cuniculus)
Sodium ion (22 Da, Ligand)
60s ribosomal protein el30 (12 kDa, Protein from Oryctolagus cuniculus)
Potassium ion (39 Da, Ligand)
60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s3 (31 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s12 (14 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein el32 (15 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
5.8s rrna (50 kDa, RNA from Oryctolagus cuniculus)
40s ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein el28 (15 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
Gpx4 secis element (275 kDa, RNA from Rattus norvegicus)
60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein ul1 (24 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein ul29 (14 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein us11 (16 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein el31 (14 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein el13 (24 kDa, Protein from Oryctolagus cuniculus)
Guanosine-5'-triphosphate (523 Da, Ligand)
40s ribosomal protein s18 (17 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein el39 (6 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l40 (14 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l4 (46 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein es19 (16 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein us10 (13 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein el8 (30 kDa, Protein from Oryctolagus cuniculus)
Eefsec and secis binding protein 2 (Complex from Homo sapiens)
60s ribosomal protein l23 (14 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein us5 (31 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein ul30 (29 kDa, Protein from Oryctolagus cuniculus)
Serine (105 Da, Ligand)
Magnesium ion (24 Da, Ligand)
60s ribosomal protein el33 (12 kDa, Protein from Oryctolagus cuniculus)
28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
Ribosomal protein es26 (13 kDa, Protein from Oryctolagus cuniculus)
Crpv ires (345 kDa, RNA from Cricket paralysis virus)
60s ribosomal protein p0 (34 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein el18 (21 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein ul2 (28 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l29 (26 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s7 (47 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
Eefsec (67 kDa, Protein from Homo sapiens)
40s ribosomal protein s6 (28 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein el22 (14 kDa, Protein from Oryctolagus cuniculus)
Rack1 (35 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein el20 (20 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l27a (16 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein el43 (10 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l26 (17 kDa, Protein from Oryctolagus cuniculus)
Secis binding protein 2 (95 kDa, Protein from Homo sapiens)
40s ribosomal protein us15 (17 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein el21 (18 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l3 (46 kDa, Protein from Oryctolagus cuniculus)
Zinc ion (65 Da, Ligand)
40s ribosomal protein es10 (18 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s25 (13 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein us19 (17 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s24 (15 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein ul13 (23 kDa, Protein from Oryctolagus cuniculus)
80s ribosome (Complex from Oryctolagus cuniculus)
Human ser-trna-sec (28 kDa, RNA from Homo sapiens)

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