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Structure of the mitochondrial ribosome from Polytomella magna with tRNAs bound to the A and P sites
Release date: June 21, 2023
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8apo
Q-score: 0.231
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8apo
Q-score: 0.231
Tobiasson V, Berzina I, Amunts A
Nat Commun (2022) 13 pp. 6132-6132 [ Pubmed: 36253367 DOI: doi:10.1038/s41467-022-33582-5 ]
Sample:
- Mtlsu-3 (66 kDa, RNA from Polytomella magna)
- Ul30m (20 kDa, Protein from Polytomella magna)
- Ms106 (18 kDa, Protein from Polytomella magna)
- Us10m (45 kDa, Protein from Polytomella magna)
- Us3m (31 kDa, Protein from Polytomella magna)
- Us4m-2 (20 kDa, Protein from Polytomella magna)
- Ml43 (14 kDa, Protein from Polytomella magna)
- Ms114 (15 kDa, Protein from Polytomella magna)
- Ml127 (16 kDa, Protein from Polytomella magna)
- Ml116 (46 kDa, Protein from Polytomella magna)
- Bl28m (15 kDa, Protein from Polytomella magna)
- Mtlsu-8 (112 kDa, RNA from Polytomella magna)
- Ml105 (15 kDa, Protein from Polytomella magna)
- Ul14m (13 kDa, Protein from Polytomella magna)
- Us4m (25 kDa, Protein from Polytomella magna)
- Mtlsu-6 (35 kDa, RNA from Polytomella magna)
- Water (18 Da, Ligand)
- Ml46 (20 kDa, Protein from Polytomella magna)
- Bl32m (6 kDa, Protein from Polytomella magna)
- Ms33 (9 kDa, Protein from Polytomella magna)
- Ms109 (18 kDa, Protein from Polytomella magna)
- Us3m-2 (12 kDa, Protein from Polytomella magna)
- Ml120 (22 kDa, Protein from Polytomella magna)
- Ms45 (30 kDa, Protein from Polytomella magna)
- Unknown (3 kDa, Protein from Polytomella magna)
- Bs18m (10 kDa, Protein from Polytomella magna)
- Bl24m (13 kDa, Protein from Polytomella magna)
- Bs19m (10 kDa, Protein from Polytomella magna)
- Ms113 (7 kDa, Protein from Polytomella magna)
- Bl19m (19 kDa, Protein from Polytomella magna)
- Bl36m (5 kDa, Protein from Polytomella magna)
- Ul2m (33 kDa, Protein from Polytomella magna)
- Mitochondrial ribosome from polytomella magna in complex with a and p site trna as well as mrna (Complex from Polytomella magna)
- Us7m-2 (9 kDa, Protein from Polytomella magna)
- Ms108 (5 kDa, Protein from Polytomella magna)
- Bl17m (20 kDa, Protein from Polytomella magna)
- Ms38 (4 kDa, Protein from Polytomella magna)
- A-site trna anticodon loop (6 kDa, RNA from Polytomella magna)
- Unknown (1 kDa, Protein from Polytomella magna)
- Mtlsu-2 (26 kDa, RNA from Polytomella magna)
- Bs1m (27 kDa, Protein from Polytomella magna)
- Potassium ion (39 Da, Ligand)
- Ul23m (18 kDa, Protein from Polytomella magna)
- Mtssu-3 (122 kDa, RNA from Polytomella magna)
- Ml123 (45 kDa, Protein from Polytomella magna)
- Ul5m (21 kDa, Protein from Polytomella magna)
- Ul15m (22 kDa, Protein from Polytomella magna)
- Bl20m (13 kDa, Protein from Polytomella magna)
- Unknown (2 kDa, Protein from Polytomella magna)
- Us14m (13 kDa, Protein from Polytomella magna)
- Ul13m (21 kDa, Protein from Polytomella magna)
- Ml41 (10 kDa, Protein from Polytomella magna)
- Ml129 (8 kDa, Protein from Polytomella magna)
- Unknown (1 kDa, Protein from Polytomella magna)
- Us8m (43 kDa, Protein from Polytomella magna)
- Bl21m (22 kDa, Protein from Polytomella magna)
- Mtssu-2 (67 kDa, RNA from Polytomella magna)
- Us2m (26 kDa, Protein from Polytomella magna)
- Ms110 (11 kDa, Protein from Polytomella magna)
- Ms107 (42 kDa, Protein from Polytomella magna)
- Ul9m (6 kDa, Protein from Polytomella magna)
- Mtlsu-5 (43 kDa, RNA from Polytomella magna)
- Ul4m (33 kDa, Protein from Polytomella magna)
- Unknown (2 kDa, Protein from Polytomella magna)
- Ml64 (14 kDa, Protein from Polytomella magna)
- Ml125 (22 kDa, Protein from Polytomella magna)
- Ml126 (44 kDa, Protein from Polytomella magna)
- Bl33m (5 kDa, Protein from Polytomella magna)
- Ml63 (7 kDa, Protein from Polytomella magna)
- Unknown (5 kDa, Protein from Polytomella magna)
- Us9m (32 kDa, Protein from Polytomella magna)
- Unknown (783 Da, Protein from Polytomella magna)
- Ms26 (19 kDa, Protein from Polytomella magna)
- Bl31m (8 kDa, Protein from Polytomella magna)
- Bl25m (28 kDa, Protein from Polytomella magna)
- Us6m (13 kDa, Protein from Polytomella magna)
- Ml118 (40 kDa, Protein from Polytomella magna)
- Mtlsu-1 (35 kDa, RNA from Polytomella magna)
- Ul6m (27 kDa, Protein from Polytomella magna)
- Ms35 (19 kDa, Protein from Polytomella magna)
- Magnesium ion (24 Da, Ligand)
- Ms112 (7 kDa, Protein from Polytomella magna)
- Ms116 (10 kDa, Protein from Polytomella magna)
- Us15m (18 kDa, Protein from Polytomella magna)
- Bl35m (16 kDa, Protein from Polytomella magna)
- Us7m (12 kDa, Protein from Polytomella magna)
- Ul29m (14 kDa, Protein from Polytomella magna)
- Bs16m (14 kDa, Protein from Polytomella magna)
- Ul22m (21 kDa, Protein from Polytomella magna)
- Unknown (954 Da, Protein from Polytomella magna)
- Mtlsu-4 (23 kDa, RNA from Polytomella magna)
- Ms115 (40 kDa, Protein from Polytomella magna)
- Unknown (4 kDa, Protein from Polytomella magna)
- Ml121 (27 kDa, Protein from Polytomella magna)
- Ul16m (19 kDa, Protein from Polytomella magna)
- Ms34 (14 kDa, Protein from Polytomella magna)
- Ms23 (19 kDa, Protein from Polytomella magna)
- Bs21m (8 kDa, Protein from Polytomella magna)
- Ms29 (39 kDa, Protein from Polytomella magna)
- P-site trna anticodon loop (7 kDa, RNA from Polytomella magna)
- Ms111 (17 kDa, Protein from Polytomella magna)
- Ul3m (34 kDa, Protein from Polytomella magna)
- Ml128 (2 kDa, Protein from Polytomella magna)
- Ml124 (52 kDa, Protein from Polytomella magna)
- Mt-5s (22 kDa, RNA from Polytomella magna)
- Bl34m (6 kDa, Protein from Polytomella magna)
- Us11m (12 kDa, Protein from Polytomella magna)
- Unknown (6 kDa, Protein from Polytomella magna)
- Zinc ion (65 Da, Ligand)
- Us17m (15 kDa, Protein from Polytomella magna)
- Ml87 (16 kDa, Protein from Polytomella magna)
- Ml122 (7 kDa, Protein from Polytomella magna)
- Ms37 (9 kDa, Protein from Polytomella magna)
- Mrna (2 kDa, RNA from Polytomella magna)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Bl27m (16 kDa, Protein from Polytomella magna)
- Ms31 (66 kDa, Protein from Polytomella magna)
- Us5m (25 kDa, Protein from Polytomella magna)
- Ul18m (12 kDa, Protein from Polytomella magna)
- Ml40 (10 kDa, Protein from Polytomella magna)
- Mtlsu-7 (171 kDa, RNA from Polytomella magna)
- Mtssu-4 (108 kDa, RNA from Polytomella magna)
- Us13m (12 kDa, Protein from Polytomella magna)
- Mtssu-1 (32 kDa, RNA from Polytomella magna)
- Unknown (4 kDa, Protein from Polytomella magna)
- Us12m (13 kDa, Protein from Polytomella magna)
Structure of the mitochondrial ribosome from Polytomella magna
Release date: Nov. 16, 2022
Resolution: 2.91 Å
EM Method: Single-particle
Fitted PDBs: 8a22
Q-score: 0.438
Resolution: 2.91 Å
EM Method: Single-particle
Fitted PDBs: 8a22
Q-score: 0.438
Tobiasson V, Berzina I, Amunts A
Nat Commun (2022) 13 pp. 6132-6132 [ Pubmed: 36253367 DOI: doi:10.1038/s41467-022-33582-5 ]
Sample:
- Unknown (6 kDa, Protein from Polytomella magna)
- Ul30m (20 kDa, Protein from Polytomella magna)
- Ms106 (18 kDa, Protein from Polytomella magna)
- Us10m (45 kDa, Protein from Polytomella magna)
- Ml43 (14 kDa, Protein from Polytomella magna)
- Ms114 (15 kDa, Protein from Polytomella magna)
- Ml127 (16 kDa, Protein from Polytomella magna)
- Ml116 (46 kDa, Protein from Polytomella magna)
- Bl28m (15 kDa, Protein from Polytomella magna)
- Mtlsu-8 (112 kDa, RNA from Polytomella magna)
- Ml105 (15 kDa, Protein from Polytomella magna)
- Ul14m (13 kDa, Protein from Polytomella magna)
- Us4m (25 kDa, Protein from Polytomella magna)
- Mtlsu-5 (45 kDa, RNA from Polytomella magna)
- Water (18 Da, Ligand)
- Ml46 (20 kDa, Protein from Polytomella magna)
- Ms33 (9 kDa, Protein from Polytomella magna)
- Ms109 (18 kDa, Protein from Polytomella magna)
- Ml120 (22 kDa, Protein from Polytomella magna)
- Ms45 (30 kDa, Protein from Polytomella magna)
- Bs18m (10 kDa, Protein from Polytomella magna)
- Bl24m (13 kDa, Protein from Polytomella magna)
- Bs19m (10 kDa, Protein from Polytomella magna)
- Ms113 (7 kDa, Protein from Polytomella magna)
- Bl19m (19 kDa, Protein from Polytomella magna)
- Us4m-2 (fragment) (20 kDa, Protein from Polytomella magna)
- Bl36m (5 kDa, Protein from Polytomella magna)
- Ul2m (33 kDa, Protein from Polytomella magna)
- Ms108 (5 kDa, Protein from Polytomella magna)
- Bl17m (20 kDa, Protein from Polytomella magna)
- Ms38 (4 kDa, Protein from Polytomella magna)
- Unknown (1 kDa, Protein from Polytomella magna)
- Mtlsu-2 (26 kDa, RNA from Polytomella magna)
- Bs1m (27 kDa, Protein from Polytomella magna)
- Potassium ion (39 Da, Ligand)
- Ul23m (18 kDa, Protein from Polytomella magna)
- Mtssu-3 (122 kDa, RNA from Polytomella magna)
- Ml123 (45 kDa, Protein from Polytomella magna)
- Ul5m (21 kDa, Protein from Polytomella magna)
- Ul15m (22 kDa, Protein from Polytomella magna)
- Bl20m (13 kDa, Protein from Polytomella magna)
- Unknown (2 kDa, Protein from Polytomella magna)
- Unknown (6 kDa, Protein from Polytomella magna)
- Us14m (13 kDa, Protein from Polytomella magna)
- Ul13m (21 kDa, Protein from Polytomella magna)
- Ml41 (10 kDa, Protein from Polytomella magna)
- Us3m-2 (fragment) (12 kDa, Protein from Polytomella magna)
- Ml129 (8 kDa, Protein from Polytomella magna)
- Unknown (1 kDa, Protein from Polytomella magna)
- Us8m (43 kDa, Protein from Polytomella magna)
- Bl21m (22 kDa, Protein from Polytomella magna)
- Us2m (26 kDa, Protein from Polytomella magna)
- Ms110 (11 kDa, Protein from Polytomella magna)
- Ms107 (42 kDa, Protein from Polytomella magna)
- Ul9m (6 kDa, Protein from Polytomella magna)
- Ul4m (33 kDa, Protein from Polytomella magna)
- Unknown (2 kDa, Protein from Polytomella magna)
- Ml64 (14 kDa, Protein from Polytomella magna)
- Ml125 (22 kDa, Protein from Polytomella magna)
- Ml126 (44 kDa, Protein from Polytomella magna)
- Mtssu-2 (68 kDa, RNA from Polytomella magna)
- Bl33m (5 kDa, Protein from Polytomella magna)
- Ml63 (7 kDa, Protein from Polytomella magna)
- Us9m (32 kDa, Protein from Polytomella magna)
- Unknown (783 Da, Protein from Polytomella magna)
- Bl31m (6 kDa, Protein from Polytomella magna)
- Ms26 (19 kDa, Protein from Polytomella magna)
- Us7m-2 (fragment) (9 kDa, Protein from Polytomella magna)
- Bl31m (8 kDa, Protein from Polytomella magna)
- Bl25m (28 kDa, Protein from Polytomella magna)
- Us6m (13 kDa, Protein from Polytomella magna)
- Ml118 (40 kDa, Protein from Polytomella magna)
- Mtlsu-1 (35 kDa, RNA from Polytomella magna)
- Ul6m (27 kDa, Protein from Polytomella magna)
- Ms35 (19 kDa, Protein from Polytomella magna)
- Us3m (32 kDa, Protein from Polytomella magna)
- Magnesium ion (24 Da, Ligand)
- Ms112 (7 kDa, Protein from Polytomella magna)
- Mtlsu-3 (67 kDa, RNA from Polytomella magna)
- Ms116 (10 kDa, Protein from Polytomella magna)
- Us15m (18 kDa, Protein from Polytomella magna)
- Unknown (3 kDa, Protein from Polytomella magna)
- Bl35m (16 kDa, Protein from Polytomella magna)
- Us7m (12 kDa, Protein from Polytomella magna)
- Ul29m (14 kDa, Protein from Polytomella magna)
- Bs16m (14 kDa, Protein from Polytomella magna)
- Ul22m (21 kDa, Protein from Polytomella magna)
- Unknown (954 Da, Protein from Polytomella magna)
- Mtlsu-4 (23 kDa, RNA from Polytomella magna)
- Ms29 (39 kDa, Protein from Polytomella magna)
- Ms115 (40 kDa, Protein from Polytomella magna)
- Unknown (4 kDa, Protein from Polytomella magna)
- Ml121 (27 kDa, Protein from Polytomella magna)
- Ul16m (19 kDa, Protein from Polytomella magna)
- Ms34 (14 kDa, Protein from Polytomella magna)
- Ms23 (19 kDa, Protein from Polytomella magna)
- Bs21m (8 kDa, Protein from Polytomella magna)
- Ms111 (17 kDa, Protein from Polytomella magna)
- Ul3m (34 kDa, Protein from Polytomella magna)
- Ml128 (2 kDa, Protein from Polytomella magna)
- Ml124 (52 kDa, Protein from Polytomella magna)
- Mt-5s (22 kDa, RNA from Polytomella magna)
- Bl34m (6 kDa, Protein from Polytomella magna)
- Us11m (12 kDa, Protein from Polytomella magna)
- Mtlsu-6 (42 kDa, RNA from Polytomella magna)
- Zinc ion (65 Da, Ligand)
- Us17m (15 kDa, Protein from Polytomella magna)
- Ml87 (16 kDa, Protein from Polytomella magna)
- Ml122 (7 kDa, Protein from Polytomella magna)
- Ms37 (9 kDa, Protein from Polytomella magna)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Bl27m (16 kDa, Protein from Polytomella magna)
- Ms31 (66 kDa, Protein from Polytomella magna)
- Us5m (25 kDa, Protein from Polytomella magna)
- Mtlsu-7 (185 kDa, RNA from Polytomella magna)
- Ul18m (12 kDa, Protein from Polytomella magna)
- Mitochondrial ribosome from polytomella magna (Complex from Polytomella magna)
- Ml40 (10 kDa, Protein from Polytomella magna)
- Us13m (12 kDa, Protein from Polytomella magna)
- Mtssu-4 (112 kDa, RNA from Polytomella magna)
- Mtssu-1 (32 kDa, RNA from Polytomella magna)
- Unknown (4 kDa, Protein from Polytomella magna)
- Us12m (13 kDa, Protein from Polytomella magna)
Structure of the mitochondrial ribosome from Polytomella magna with tRNA bound to the P site
Release date: Nov. 16, 2022
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8apn
Q-score: 0.399
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8apn
Q-score: 0.399
Tobiasson V, Berzina I, Amunts A
Nat Commun (2022) 13 pp. 6132-6132 [ Pubmed: 36253367 DOI: doi:10.1038/s41467-022-33582-5 ]
Sample:
- Mtlsu-3 (66 kDa, RNA from Polytomella magna)
- Ul30m (20 kDa, Protein from Polytomella magna)
- Ms106 (18 kDa, Protein from Polytomella magna)
- Ml116 (46 kDa, Protein from Polytomella magna)
- Us10m (45 kDa, Protein from Polytomella magna)
- Us4m-2 (20 kDa, Protein from Polytomella magna)
- Ml43 (14 kDa, Protein from Polytomella magna)
- Ms114 (15 kDa, Protein from Polytomella magna)
- Ml127 (16 kDa, Protein from Polytomella magna)
- Ml116 (46 kDa, Protein from Polytomella magna)
- Bl28m (15 kDa, Protein from Polytomella magna)
- Mtlsu-8 (112 kDa, RNA from Polytomella magna)
- Us4m (25 kDa, Protein from Polytomella magna)
- Mtlsu-6 (35 kDa, RNA from Polytomella magna)
- Water (18 Da, Ligand)
- Ml46 (20 kDa, Protein from Polytomella magna)
- Bl32m (6 kDa, Protein from Polytomella magna)
- Ms33 (9 kDa, Protein from Polytomella magna)
- Ms109 (18 kDa, Protein from Polytomella magna)
- Us3m-2 (12 kDa, Protein from Polytomella magna)
- Ml120 (22 kDa, Protein from Polytomella magna)
- Ms45 (30 kDa, Protein from Polytomella magna)
- Bs18m (10 kDa, Protein from Polytomella magna)
- Bl24m (13 kDa, Protein from Polytomella magna)
- P-site trna (23 kDa, RNA from Polytomella magna)
- Bs19m (10 kDa, Protein from Polytomella magna)
- Ms113 (7 kDa, Protein from Polytomella magna)
- Bl19m (19 kDa, Protein from Polytomella magna)
- Bl36m (5 kDa, Protein from Polytomella magna)
- Ul2m (33 kDa, Protein from Polytomella magna)
- Us7m-2 (9 kDa, Protein from Polytomella magna)
- Mrna (1 kDa, RNA from Polytomella magna)
- Ms108 (5 kDa, Protein from Polytomella magna)
- Bl17m (20 kDa, Protein from Polytomella magna)
- Ms38 (4 kDa, Protein from Polytomella magna)
- Unknown (1 kDa, Protein from Polytomella magna)
- Mtlsu-2 (26 kDa, RNA from Polytomella magna)
- Bs1m (27 kDa, Protein from Polytomella magna)
- Potassium ion (39 Da, Ligand)
- Ul23m (18 kDa, Protein from Polytomella magna)
- Mtssu-3 (122 kDa, RNA from Polytomella magna)
- Ml123 (45 kDa, Protein from Polytomella magna)
- Ul5m (21 kDa, Protein from Polytomella magna)
- Ul15m (22 kDa, Protein from Polytomella magna)
- Bl20m (13 kDa, Protein from Polytomella magna)
- Unknown (2 kDa, Protein from Polytomella magna)
- Us14m (13 kDa, Protein from Polytomella magna)
- Ul13m (21 kDa, Protein from Polytomella magna)
- Ml41 (10 kDa, Protein from Polytomella magna)
- Ml129 (8 kDa, Protein from Polytomella magna)
- Unknown (1 kDa, Protein from Polytomella magna)
- Us8m (43 kDa, Protein from Polytomella magna)
- Bl21m (22 kDa, Protein from Polytomella magna)
- Mtssu-2 (67 kDa, RNA from Polytomella magna)
- Us2m (26 kDa, Protein from Polytomella magna)
- Ms110 (11 kDa, Protein from Polytomella magna)
- Ms107 (42 kDa, Protein from Polytomella magna)
- Ul9m (6 kDa, Protein from Polytomella magna)
- Mtlsu-5 (43 kDa, RNA from Polytomella magna)
- Ul4m (33 kDa, Protein from Polytomella magna)
- Unknown (2 kDa, Protein from Polytomella magna)
- Ml64 (14 kDa, Protein from Polytomella magna)
- Ml125 (22 kDa, Protein from Polytomella magna)
- Ml126 (44 kDa, Protein from Polytomella magna)
- Bl33m (5 kDa, Protein from Polytomella magna)
- Ml63 (7 kDa, Protein from Polytomella magna)
- Unknown (5 kDa, Protein from Polytomella magna)
- Us9m (32 kDa, Protein from Polytomella magna)
- Unknown (783 Da, Protein from Polytomella magna)
- Ms26 (19 kDa, Protein from Polytomella magna)
- Bl31m (8 kDa, Protein from Polytomella magna)
- Bl25m (28 kDa, Protein from Polytomella magna)
- Us6m (13 kDa, Protein from Polytomella magna)
- Ml118 (40 kDa, Protein from Polytomella magna)
- Mtlsu-1 (35 kDa, RNA from Polytomella magna)
- Ul6m (27 kDa, Protein from Polytomella magna)
- Ms35 (19 kDa, Protein from Polytomella magna)
- Us3m (32 kDa, Protein from Polytomella magna)
- Magnesium ion (24 Da, Ligand)
- Ms112 (7 kDa, Protein from Polytomella magna)
- Ms116 (10 kDa, Protein from Polytomella magna)
- Us15m (18 kDa, Protein from Polytomella magna)
- Unknown (3 kDa, Protein from Polytomella magna)
- Bl35m (16 kDa, Protein from Polytomella magna)
- Us7m (12 kDa, Protein from Polytomella magna)
- Ul29m (14 kDa, Protein from Polytomella magna)
- Bs16m (14 kDa, Protein from Polytomella magna)
- Ul22m (21 kDa, Protein from Polytomella magna)
- Unknown (954 Da, Protein from Polytomella magna)
- Mtlsu-4 (23 kDa, RNA from Polytomella magna)
- Ms29 (39 kDa, Protein from Polytomella magna)
- Ms115 (40 kDa, Protein from Polytomella magna)
- Unknown (4 kDa, Protein from Polytomella magna)
- Ml121 (27 kDa, Protein from Polytomella magna)
- Ul16m (19 kDa, Protein from Polytomella magna)
- Ms34 (14 kDa, Protein from Polytomella magna)
- Ms23 (19 kDa, Protein from Polytomella magna)
- Bs21m (8 kDa, Protein from Polytomella magna)
- Ms111 (17 kDa, Protein from Polytomella magna)
- Ul3m (34 kDa, Protein from Polytomella magna)
- Ml128 (2 kDa, Protein from Polytomella magna)
- Ml124 (52 kDa, Protein from Polytomella magna)
- Mt-5s (22 kDa, RNA from Polytomella magna)
- Bl34m (6 kDa, Protein from Polytomella magna)
- Us11m (12 kDa, Protein from Polytomella magna)
- Hypothetical protein (13 kDa, Protein from Polytomella magna)
- Mitochondrial ribosome from polytomella magna in complex with p-site trna as well as mrna (Complex from Polytomella magna)
- Ml105 (15 kDa, Protein from Polytomella magna)
- Unknown (6 kDa, Protein from Polytomella magna)
- Us17m (15 kDa, Protein from Polytomella magna)
- Zinc ion (65 Da, Ligand)
- Ml87 (16 kDa, Protein from Polytomella magna)
- Ml122 (7 kDa, Protein from Polytomella magna)
- Ms37 (9 kDa, Protein from Polytomella magna)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Bl27m (16 kDa, Protein from Polytomella magna)
- Ms31 (66 kDa, Protein from Polytomella magna)
- Us5m (25 kDa, Protein from Polytomella magna)
- Ul18m (12 kDa, Protein from Polytomella magna)
- Ml116 (43 kDa, Protein from Polytomella magna)
- Ml40 (10 kDa, Protein from Polytomella magna)
- Mtlsu-7 (171 kDa, RNA from Polytomella magna)
- Mtssu-4 (108 kDa, RNA from Polytomella magna)
- Us13m (12 kDa, Protein from Polytomella magna)
- Mtssu-1 (32 kDa, RNA from Polytomella magna)
- Unknown (4 kDa, Protein from Polytomella magna)
- Us12m (13 kDa, Protein from Polytomella magna)
55S mammalian mitochondrial ribosome with tRNA(P/P) and tRNA(E*)
Release date: June 2, 2021
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7nsj
Q-score: 0.345
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7nsj
Q-score: 0.345
Kummer E, Schubert KN, Schoenhut T, Scaiola A, Ban N
Mol Cell (2021) 81 pp. 2566-2582.e6 [ Pubmed: 33878294 DOI: doi:10.1016/j.molcel.2021.03.042 ]
Sample:
- 55s mammalian mitochondrial ribosome with trna(p/p) and trna(e*) (Complex from Sus scrofa)
- Mitochondrial ribosomal protein s12 (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l57 (12 kDa, Protein from Pig)
- Ul24m (24 kDa, Protein from Pig)
- Ml62 (ict1) (23 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l4 (33 kDa, Protein from Pig)
- Ict1 (43 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l40 (24 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l47 (30 kDa, Protein from Pig)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- Mitochondrial ribosomal protein l41 (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l28 (30 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l11 (20 kDa, Protein from Pig)
- Death associated protein 3 (46 kDa, Protein from Pig)
- Unknown (1 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s35 (37 kDa, Protein from Pig)
- Water (18 Da, Ligand)
- Ul2m (33 kDa, Protein from Pig)
- Us11m (20 kDa, Protein from Pig)
- Ul30m (18 kDa, Protein from Pig)
- Bl33m (7 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l18 (20 kDa, Protein from Pig)
- 39s ribosomal protein s30, mitochondrial (49 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s2 (31 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s14 (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s7 (28 kDa, Protein from Pig)
- Bl32m (21 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l20 (17 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l50 (22 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l37 (47 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s18c (16 kDa, Protein from Pig)
- Ms37 (13 kDa, Protein from Pig)
- 39s ribosomal protein l48, mitochondrial (29 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s27 (51 kDa, Protein from Pig)
- Pentatricopeptide repeat domain 3,pentatricopeptide repeat domain 3,pentatricopeptide repeat domain 3,pentatricopeptide repeat domain 3,ms39,pentatricopeptide repeat domain 3,pentatricopeptide repeat domain 3,pentatricopeptide repeat domain 3,pentatricopeptide repeat domain 3 (76 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l46 (32 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l51 (15 kDa, Protein from Pig)
- Us9m (45 kDa, Protein from Pig)
- Us17m (14 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s22 (43 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s18a (22 kDa, Protein from Pig)
- Bs21m (10 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s10 (23 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l19 (33 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l43 (17 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s24 (18 kDa, Protein from Pig)
- Ml44 (37 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s25 (19 kDa, Protein from Pig)
- Mrna (1 kDa, RNA from Pig)
- Mitochondrial ribosomal protein l45 (35 kDa, Protein from Pig)
- Mitoribosomal protein ms28, mrps28 (21 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l12 (21 kDa, Protein from Pig)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Bs6m (30 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l9 (30 kDa, Protein from Pig)
- Ml54 (15 kDa, Protein from Pig)
- Ul22m (24 kDa, Protein from Pig)
- Ul15m (33 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l34 (10 kDa, Protein from Pig)
- Aurora kinase a interacting protein 1 (22 kDa, Protein from Pig)
- Ml52 (13 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s26 (23 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l27 (15 kDa, Protein from Pig)
- Ml42 (16 kDa, Protein from Pig)
- Ms23 (21 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l10 (29 kDa, Protein from Pig)
- Bl17m (19 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l39 (38 kDa, Protein from Pig)
- Magnesium ion (24 Da, Ligand)
- Ul23m (17 kDa, Protein from Pig)
- Ribosomal protein (10 kDa, Protein from Pig)
- 28s ribosomal protein s31, mitochondrial (44 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l21 (23 kDa, Protein from Pig)
- 12s rrna (308 kDa, RNA from Pig)
- Mrpl34 (18 kDa, Protein from Pig)
- Ml64 (25 kDa, Protein from Pig)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Pig)
- 28s ribosomal protein s5, mitochondrial isoform x2 (48 kDa, Protein from Pig)
- Ml53 (12 kDa, Protein from Pig)
- Us15m (27 kDa, Protein from Pig)
- Ul14m (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l35 (21 kDa, Protein from Pig)
- Cp trnaphe (23 kDa, RNA from Pig)
- Ms33 (12 kDa, Protein from Pig)
- Spermine (202 Da, Ligand)
- Ms34 (25 kDa, Protein from Pig)
- Bl31m (15 kDa, Protein from Pig)
- Zinc ion (65 Da, Ligand)
- Ul13m (20 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l38 (44 kDa, Protein from Pig)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Pig)
- 16s rrna (504 kDa, RNA from Pig)
- Trna(p/p) and trna(e*) (21 kDa, RNA from Pig)
- Ul16m (28 kDa, Protein from Pig)
55S mammalian mitochondrial ribosome with mtRF1a and P-site tRNAMet
Release date: May 5, 2021
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7nqh
Q-score: 0.421
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7nqh
Q-score: 0.421
Kummer E, Schubert KN, Schoenhut T, Scaiola A, Ban N
Mol Cell (2021) 81 pp. 2566-2582.e6 [ DOI: doi:10.1016/j.molcel.2021.03.042 Pubmed: 33878294 ]
Sample:
- Ms34 (25 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l20 (17 kDa, Protein from Pig)
- Ml62 (ict1) (23 kDa, Protein from Pig)
- 28s ribosomal protein s7, mitochondrial (27 kDa, Protein from Pig)
- Pentatricopeptide repeat domain 3 (79 kDa, Protein from Pig)
- Bs6m (30 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s25 (19 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l57 (12 kDa, Protein from Pig)
- Ul22m (24 kDa, Protein from Pig)
- Unknown (1 kDa, Protein from Pig)
- Ml42 (16 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l18 (20 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s2 (31 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s10 (23 kDa, Protein from Pig)
- Ribosomal protein (10 kDa, Protein from Pig)
- Rna (Complex from Homo sapiens)
- Spermine (202 Da, Ligand)
- 16s rrna (504 kDa, RNA from Pig)
- Mitochondrial ribosomal protein l10 (29 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s5 (48 kDa, Protein from Pig)
- Ul15m (33 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s22 (43 kDa, Protein from Pig)
- Ml40 (24 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l38 (44 kDa, Protein from Pig)
- Bl32m (21 kDa, Protein from Pig)
- Ul30m (18 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l28 (30 kDa, Protein from Pig)
- Ict1 (43 kDa, Protein from Pig)
- Death associated protein 3 (46 kDa, Protein from Pig)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- Mitochondrial ribosomal protein s18a (22 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l51 (15 kDa, Protein from Pig)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Pig)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Aurora kinase a interacting protein 1 (22 kDa, Protein from Pig)
- Us15m (27 kDa, Protein from Pig)
- Bl17m (19 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l35 (21 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l43 (17 kDa, Protein from Pig)
- Us11m (20 kDa, Protein from Pig)
- Mrna (2 kDa, RNA from Homo sapiens)
- Ml52 (13 kDa, Protein from Pig)
- Ml44 (37 kDa, Protein from Pig)
- Ml64 (25 kDa, Protein from Pig)
- Translation termination complex of mitochondrial ribosome (Complex from Sus scrofa)
- Mitoribosomal protein ms28, mrps28 (21 kDa, Protein from Pig)
- Mrpl34 (18 kDa, Protein from Pig)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Pig)
- Ml53 (12 kDa, Protein from Pig)
- Bl33m (7 kDa, Protein from Pig)
- Peptide chain release factor 1-like, mitochondrial (41 kDa, Protein from Homo sapiens)
- Trna(phe) in lsu (23 kDa, RNA from Pig)
- Bs21m (10 kDa, Protein from Pig)
- Ul16m (28 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s26 (23 kDa, Protein from Pig)
- Ul14m (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l21 (23 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l4 (33 kDa, Protein from Pig)
- Us9m (45 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l11 (20 kDa, Protein from Pig)
- Zinc ion (65 Da, Ligand)
- Mitochondrial ribosomal protein l41 (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s12 (15 kDa, Protein from Pig)
- Ms37 (13 kDa, Protein from Pig)
- Peptide chain release factor 1-like, mitochondrial (Complex from Homo sapiens)
- 39s ribosomal protein l48, mitochondrial (29 kDa, Protein from Pig)
- 12s rrna (308 kDa, RNA from Pig)
- Mitochondrial ribosomal protein s35 (37 kDa, Protein from Pig)
- Water (18 Da, Ligand)
- Ms33 (12 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l34 (10 kDa, Protein from Pig)
- 39s ribosomal protein s30, mitochondrial (49 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s18c (16 kDa, Protein from Pig)
- Ul2m (33 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l9 (30 kDa, Protein from Pig)
- Us17m (14 kDa, Protein from Pig)
- Ml54 (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l46 (32 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s31 (44 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l12 (21 kDa, Protein from Pig)
- Bl31m (15 kDa, Protein from Pig)
- Ul13m (20 kDa, Protein from Pig)
- Ul24m (24 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l19 (33 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s27 (51 kDa, Protein from Pig)
- Magnesium ion (24 Da, Ligand)
- Ul23m (17 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l27 (15 kDa, Protein from Pig)
- Translation termination complex of mitochondrial ribosome with release factor mtrf1a and p-site trnamet (Complex)
- Mitochondrial ribosomal protein l45 (35 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l39 (38 kDa, Protein from Pig)
- Ms23 (21 kDa, Protein from Pig)
- Trnamet (22 kDa, RNA from Homo sapiens)
- Mitochondrial ribosomal protein l50 (22 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s14 (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s24 (18 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l47 (30 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l37 (47 kDa, Protein from Pig)
55S mammalian mitochondrial ribosome with ICT1 and P site tRNAMet
Release date: May 5, 2021
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7nql
Q-score: 0.437
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7nql
Q-score: 0.437
Kummer E, Schubert KN, Schoenhut T, Scaiola A, Ban N
Mol Cell (2021) 81 pp. 2566-2582.e6 [ DOI: doi:10.1016/j.molcel.2021.03.042 Pubmed: 33878294 ]
Sample:
- Unknown (1 kDa, Protein from unidentified)
- Mitochondrial ribosomal protein s27 (51 kDa, Protein from Sus scrofa)
- Bl17m (19 kDa, Protein from Sus scrofa)
- Ul24m (24 kDa, Protein from Sus scrofa)
- Bl31m (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l28 (30 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18c (16 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l45 (35 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l40 (24 kDa, Protein from Sus scrofa)
- Ul13m (20 kDa, Protein from Sus scrofa)
- Us11m (20 kDa, Protein from Sus scrofa)
- Fmet-trnamet (p site) (22 kDa, RNA from Homo sapiens)
- Mitochondrial ribosomal protein l4 (33 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l48, mitochondrial (29 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l21 (23 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s35 (37 kDa, Protein from Sus scrofa)
- Rna (Complex from Homo sapiens)
- Ml53 (12 kDa, Protein from Sus scrofa)
- Ms33 (12 kDa, Protein from Sus scrofa)
- Spermine (202 Da, Ligand)
- Ms34 (25 kDa, Protein from Sus scrofa)
- Ul16m (28 kDa, Protein from Sus scrofa)
- Ml52 (13 kDa, Protein from Sus scrofa)
- 39s ribosomal protein s30, mitochondrial (49 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s10 (23 kDa, Protein from Sus scrofa)
- Ul14m (15 kDa, Protein from Sus scrofa)
- Ict1 (43 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18a (22 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l47 (30 kDa, Protein from Sus scrofa)
- Ml62 (ict1) (23 kDa, Protein from Sus scrofa)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Bl32m (21 kDa, Protein from Sus scrofa)
- Ml64 (25 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s2 (31 kDa, Protein from Sus scrofa)
- Ml44 (37 kDa, Protein from Sus scrofa)
- Mrna (1 kDa, RNA from Homo sapiens)
- Ul22m (24 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s25 (19 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s5 (48 kDa, Protein from Sus scrofa)
- Cp trnaphe (23 kDa, RNA from Sus scrofa)
- Peptidyl-trna hydrolase ict1, mitochondrial (20 kDa, Protein from Homo sapiens)
- Mitochondrial ribosomal protein s14 (15 kDa, Protein from Sus scrofa)
- Ul2m (33 kDa, Protein from Sus scrofa)
- Mrpl34 (18 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l37 (47 kDa, Protein from Sus scrofa)
- Ul15m (33 kDa, Protein from Sus scrofa)
- Mitoribosomal protein ms28, mrps28 (21 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l38 (44 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l20 (17 kDa, Protein from Sus scrofa)
- Ms23 (21 kDa, Protein from Sus scrofa)
- Ml42 (16 kDa, Protein from Sus scrofa)
- Ul30m (18 kDa, Protein from Sus scrofa)
- Us17m (14 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l11 (20 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s31 (44 kDa, Protein from Sus scrofa)
- Death associated protein 3 (46 kDa, Protein from Sus scrofa)
- Bl33m (7 kDa, Protein from Sus scrofa)
- 16s rrna (504 kDa, RNA from Sus scrofa)
- 12s rrna (308 kDa, RNA from Sus scrofa)
- Mitochondrial ribosomal protein l41 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l18 (20 kDa, Protein from Sus scrofa)
- Ict1 (Complex from Homo sapiens)
- Mitochondrial ribosomal protein s26 (23 kDa, Protein from Sus scrofa)
- Zinc ion (65 Da, Ligand)
- Mitochondrial ribosomal protein l9 (30 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l27 (15 kDa, Protein from Sus scrofa)
- Water (18 Da, Ligand)
- Mitochondrial ribosomal protein l50 (22 kDa, Protein from Sus scrofa)
- Ribosomal protein (10 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s12 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l34 (10 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l57 (12 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l39 (38 kDa, Protein from Sus scrofa)
- 55s mammalian mitochondrial ribosome (Complex from Sus scrofa)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Sus scrofa)
- Ml54 (15 kDa, Protein from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- Us9m (45 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l35 (21 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s22 (43 kDa, Protein from Sus scrofa)
- Bs6m (30 kDa, Protein from Sus scrofa)
- Unknown (Complex from unidentified)
- Mitochondrial ribosomal protein l10 (29 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l43 (17 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l51 (15 kDa, Protein from Sus scrofa)
- Ul23m (17 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l46 (32 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s7 (28 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s24 (18 kDa, Protein from Sus scrofa)
- Bs21m (10 kDa, Protein from Sus scrofa)
- Aurora kinase a interacting protein 1 (22 kDa, Protein from Sus scrofa)
- Pentatricopeptide repeat domain 3 (79 kDa, Protein from Sus scrofa)
- Ms37 (13 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l19 (33 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l12 (21 kDa, Protein from Sus scrofa)
- 55s mammalian mitochondrial ribosome with ict1 and p site fmet-trnamet (Complex)
- Us15m (27 kDa, Protein from Sus scrofa)
39S mammalian mitochondrial large ribosomal subunit with mtRRF (post) and mtEFG2
Release date: May 5, 2021
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7nsh
Q-score: 0.49
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7nsh
Q-score: 0.49
Kummer E, Schubert KN, Schoenhut T, Scaiola A, Ban N
Mol Cell (2021) 81 pp. 2566-2582.e6 [ Pubmed: 33878294 DOI: doi:10.1016/j.molcel.2021.03.042 ]
Sample:
- Bl32m (21 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l45 (35 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l12 (21 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l20 (17 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l50 (22 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l37 (47 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l57 (12 kDa, Protein from Pig)
- Ml53 (12 kDa, Protein from Pig)
- Ul24m (24 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l9 (30 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l35 (21 kDa, Protein from Pig)
- Ul14m (15 kDa, Protein from Pig)
- Ml62 (ict1) (23 kDa, Protein from Pig)
- 39s ribosomal protein l48, mitochondrial (29 kDa, Protein from Pig)
- Ml54 (15 kDa, Protein from Pig)
- Ml64 (25 kDa, Protein from Pig)
- Cp trnaphe (23 kDa, RNA from Pig)
- Mitochondrial ribosomal protein l4 (33 kDa, Protein from Pig)
- Ict1 (43 kDa, Protein from Pig)
- Ul15m (33 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l40 (24 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l34 (10 kDa, Protein from Pig)
- Ul22m (24 kDa, Protein from Pig)
- 39s mammalian mitochondrial large ribosomal subunit with mtrrf (post) and mtefg2 (Complex)
- Spermine (202 Da, Ligand)
- Bl31m (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l46 (32 kDa, Protein from Pig)
- Ml52 (13 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l47 (30 kDa, Protein from Pig)
- Ribosome-releasing factor 2, mitochondrial (83 kDa, Protein from Homo sapiens)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Mtrrf (post) and mtefg2 (Complex from Homo sapiens)
- Mitochondrial ribosomal protein l51 (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l27 (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l41 (15 kDa, Protein from Pig)
- Ul13m (20 kDa, Protein from Pig)
- Ml42 (16 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l28 (30 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l11 (20 kDa, Protein from Pig)
- Water (18 Da, Ligand)
- Mitochondrial ribosomal protein l10 (29 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l38 (44 kDa, Protein from Pig)
- Ul2m (33 kDa, Protein from Pig)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- Bl17m (19 kDa, Protein from Pig)
- Ul30m (18 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l39 (38 kDa, Protein from Pig)
- Magnesium ion (24 Da, Ligand)
- Ul23m (17 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s18a (22 kDa, Protein from Pig)
- Bl33m (7 kDa, Protein from Pig)
- 39s ribosomal protein s30, mitochondrial (49 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l18 (20 kDa, Protein from Pig)
- Ribosomal protein (10 kDa, Protein from Pig)
- 39s mammalian mitochondrial large ribosomal subunit (Complex from Sus scrofa)
- Mitochondrial ribosomal protein l21 (23 kDa, Protein from Pig)
- Ribosome-recycling factor, mitochondrial (28 kDa, Protein from Homo sapiens)
- 16s rrna (504 kDa, RNA from Pig)
- Mrpl34 (18 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l19 (33 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l43 (17 kDa, Protein from Pig)
- Ml44 (37 kDa, Protein from Pig)
- Ul16m (28 kDa, Protein from Pig)
55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)
Release date: July 15, 2020
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6ydp
Q-score: 0.484
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6ydp
Q-score: 0.484
EMBO J (2020) 39 pp. e104820-e104820 [ Pubmed: 32602580 DOI: doi:10.15252/embj.2020104820 ]
Sample:
- Mrna (1 kDa, RNA from Homo sapiens)
- Mitochondrial ribosomal protein l20 (17 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l46 (32 kDa, Protein from Pig)
- Ml62 (ict1) (23 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s7 (28 kDa, Protein from Pig)
- Ict1 (38 kDa, Protein from Pig)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- Pentatricopeptide repeat domain 3 (79 kDa, Protein from Pig)
- Bs6m (30 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l57 (12 kDa, Protein from Pig)
- Ribosomal protein (10 kDa, Protein from Pig)
- Ml42 (16 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s25 (19 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l18 (20 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s2 (31 kDa, Protein from Pig)
- Spermine (202 Da, Ligand)
- Bl33m (7 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s5 (48 kDa, Protein from Pig)
- Ms23 (21 kDa, Protein from Pig)
- Ul15m (33 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s10 (23 kDa, Protein from Pig)
- Mrpl34 (18 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l38 (44 kDa, Protein from Pig)
- Bl32m (21 kDa, Protein from Pig)
- 55s s. scrofa mitochondrial ribosome in complex with mtefg1 and fmet-trnamet (1 MDa, Complex)
- Mitochondrial ribosomal protein l28 (30 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l10 (29 kDa, Protein from Pig)
- Unknown peptide (1 kDa, Protein from Pig)
- Fmet-trnamet (p site) and mrna (Complex from Homo sapiens)
- Ul22m (24 kDa, Protein from Pig)
- 55s s. scrofa mitochondrial ribosome (Complex from Sus scrofa)
- Mitochondrial ribosomal protein l51 (15 kDa, Protein from Pig)
- Ml53 (12 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s18a (22 kDa, Protein from Pig)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- Aurora kinase a interacting protein 1 (22 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l35 (21 kDa, Protein from Pig)
- Cp trnaphe (23 kDa, RNA from Sus scrofa)
- Mitochondrial ribosomal protein l43 (17 kDa, Protein from Pig)
- Us11m (20 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l39 (38 kDa, Protein from Pig)
- Ml44 (37 kDa, Protein from Pig)
- Ml64 (25 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s31 (44 kDa, Protein from Pig)
- Mitoribosomal protein ms28, mrps28 (21 kDa, Protein from Pig)
- Uncharacterized protein (19 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s22 (43 kDa, Protein from Pig)
- Elongation factor g, mitochondrial (80 kDa, Protein from Homo sapiens)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Mitochondrial ribosomal protein l37 (47 kDa, Protein from Pig)
- Bs21m (10 kDa, Protein from Pig)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Pig)
- N-formylmethionine (177 Da, Ligand)
- Ul16m (28 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s26 (23 kDa, Protein from Pig)
- 39s ribosomal protein s30, mitochondrial (49 kDa, Protein from Pig)
- Death associated protein 3 (46 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l21 (23 kDa, Protein from Pig)
- Us9m (45 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l4 (33 kDa, Protein from Pig)
- Uncharacterized protein (24 kDa, Protein from Pig)
- 12s rrna (5 MDa, RNA from Pig)
- Mitochondrial ribosomal protein l11 (20 kDa, Protein from Pig)
- Zinc ion (65 Da, Ligand)
- Mitochondrial ribosomal protein l41 (15 kDa, Protein from Pig)
- Ms37 (13 kDa, Protein from Pig)
- 39s ribosomal protein l48, mitochondrial (29 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s35 (37 kDa, Protein from Pig)
- Water (18 Da, Ligand)
- Ms33 (12 kDa, Protein from Pig)
- Ul23m (17 kDa, Protein from Pig)
- Fmet-trnamet (p site) (22 kDa, RNA from Homo sapiens)
- Mitochondrial ribosomal protein s18c (16 kDa, Protein from Pig)
- Ms34 (25 kDa, Protein from Pig)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Pig)
- Ul2m (33 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l9 (30 kDa, Protein from Pig)
- Us17m (14 kDa, Protein from Pig)
- Ul24m (24 kDa, Protein from Pig)
- Ml54 (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l19 (33 kDa, Protein from Pig)
- Us15m (27 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l12 (21 kDa, Protein from Pig)
- Ul30m (18 kDa, Protein from Pig)
- Bl31m (15 kDa, Protein from Pig)
- Ul13m (20 kDa, Protein from Pig)
- Magnesium ion (24 Da, Ligand)
- Mitochondrial ribosomal protein s27 (49 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l27 (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l45 (35 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l34 (10 kDa, Protein from Pig)
- Ul14m (15 kDa, Protein from Pig)
- Ml52 (13 kDa, Protein from Pig)
- Elongation factor g, mitochondrial (Complex from Homo sapiens)
- Mitochondrial ribosomal protein l50 (22 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s14 (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l47 (30 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s12 (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s24 (18 kDa, Protein from Pig)
Structure of the yeast mitochondrial ribosome - Class A
Release date: Feb. 15, 2017
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 5mrc
Q-score: 0.443
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 5mrc
Q-score: 0.443
Desai N, Brown A, Amunts A, Ramakrishnan V
Science (2017) 355 pp. 528-531 [ Pubmed: 28154081 DOI: doi:10.1126/science.aal2415 ]
Sample:
- Bs16m (13 kDa, Protein from Baker's yeast)
- Ul3m (27 kDa, Protein from Baker's yeast)
- Ul14m (14 kDa, Protein from Baker's yeast)
- Ul30m (9 kDa, Protein from Baker's yeast)
- Bl34m (5 kDa, Protein from Baker's yeast)
- Bl28m (25 kDa, Protein from Baker's yeast)
- Ms23 (27 kDa, Protein from Baker's yeast)
- Ul6m (21 kDa, Protein from Baker's yeast)
- Ms29 (45 kDa, Protein from Baker's yeast)
- Ms45 (36 kDa, Protein from Baker's yeast)
- Ml59 (18 kDa, Protein from Baker's yeast)
- Bl21m (13 kDa, Protein from Baker's yeast)
- Ms33 (11 kDa, Protein from Baker's yeast)
- Us13m (13 kDa, Protein from Baker's yeast)
- Us17m (27 kDa, Protein from Baker's yeast)
- Us8m (17 kDa, Protein from Baker's yeast)
- Ul24m (33 kDa, Protein from Baker's yeast)
- Ul16m (22 kDa, Protein from Baker's yeast)
- Ul4m (28 kDa, Protein from Baker's yeast)
- Ms35 (32 kDa, Protein from Baker's yeast)
- 15s ribosomal rna (528 kDa, RNA from Baker's yeast)
- Bl27m (39 kDa, Protein from Baker's yeast)
- Ml38 (40 kDa, Protein from Baker's yeast)
- Bl9m (8 kDa, Protein from Baker's yeast)
- Sodium ion (22 Da, Ligand)
- Us19m (9 kDa, Protein from Baker's yeast)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Bl32m (13 kDa, Protein from Baker's yeast)
- Bl17m (26 kDa, Protein from Baker's yeast)
- Ml41 (14 kDa, Protein from Baker's yeast)
- Ms38 (4 kDa, Protein from Baker's yeast)
- Ml58 (20 kDa, Protein from Baker's yeast)
- Us10m (21 kDa, Protein from Baker's yeast)
- Ms26 (26 kDa, Protein from Baker's yeast)
- 21s ribosomal rna (1 MDa, RNA from Baker's yeast)
- Us12m (13 kDa, Protein from Baker's yeast)
- Unknown protein sequence 2 (12 kDa, Protein from Baker's yeast)
- Us4m (56 kDa, Protein from Baker's yeast)
- Us7m (18 kDa, Protein from Baker's yeast)
- Ml46 (32 kDa, Protein from Baker's yeast)
- Ml40 (13 kDa, Protein from Baker's yeast)
- Ms44 (39 kDa, Protein from Baker's yeast)
- Ul13m (18 kDa, Protein from Baker's yeast)
- Ml49 (12 kDa, Protein from Baker's yeast)
- Bs21m (10 kDa, Protein from Baker's yeast)
- Ul23m (24 kDa, Protein from Baker's yeast)
- Bs6m (14 kDa, Protein from Baker's yeast)
- Bl31m (20 kDa, Protein from Baker's yeast)
- Us5m (33 kDa, Protein from Baker's yeast)
- Trna (24 kDa, RNA from Baker's yeast)
- Ul29m (26 kDa, Protein from Baker's yeast)
- Ms42 (29 kDa, Protein from Baker's yeast)
- Bl19m (17 kDa, Protein from Baker's yeast)
- Magnesium ion (24 Da, Ligand)
- Ul15m (24 kDa, Protein from Baker's yeast)
- Ms43 (36 kDa, Protein from Baker's yeast)
- Us11m (16 kDa, Protein from Baker's yeast)
- Unknown protein sequence 1 (8 kDa, Protein from Baker's yeast)
- Bs1m (39 kDa, Protein from Baker's yeast)
- Yeast mitochondrial ribosome - class a (Complex from Saccharomyces cerevisiae)
- Us9m (27 kDa, Protein from Baker's yeast)
- Ul22m (25 kDa, Protein from Baker's yeast)
- Ml57 (23 kDa, Protein from Baker's yeast)
- Us3m (47 kDa, Protein from Baker's yeast)
- Bl36m (4 kDa, Protein from Baker's yeast)
- Ml50 (30 kDa, Protein from Baker's yeast)
- Ml44 (36 kDa, Protein from Baker's yeast)
- Us2m (29 kDa, Protein from Baker's yeast)
- Ms47 (51 kDa, Protein from Baker's yeast)
- Zinc ion (65 Da, Ligand)
- Ml60 (14 kDa, Protein from Baker's yeast)
- Ul2m (43 kDa, Protein from Baker's yeast)
- Bl33m (7 kDa, Protein from Baker's yeast)
- Us14m (13 kDa, Protein from Baker's yeast)
- Ms41 (11 kDa, Protein from Baker's yeast)
- Ml67 (25 kDa, Protein from Baker's yeast)
- Ms46 (18 kDa, Protein from Baker's yeast)
- Ms37 (10 kDa, Protein from Baker's yeast)
- Bs18m (11 kDa, Protein from Baker's yeast)
- Ml43 (15 kDa, Protein from Baker's yeast)
- Ul5m (31 kDa, Protein from Baker's yeast)
- Bl35m (7 kDa, Protein from Baker's yeast)
- Us15m (29 kDa, Protein from Baker's yeast)
Structure of the yeast mitochondrial ribosome - Class B
Release date: Feb. 15, 2017
Resolution: 3.75 Å
EM Method: Single-particle
Fitted PDBs: 5mre
Q-score: 0.368
Resolution: 3.75 Å
EM Method: Single-particle
Fitted PDBs: 5mre
Q-score: 0.368
Desai N, Brown A, Amunts A, Ramakrishnan V
Science (2017) 355 pp. 528-531 [ Pubmed: 28154081 DOI: doi:10.1126/science.aal2415 ]
Sample:
- Bs6m (14 kDa, Protein from Saccharomyces cerevisiae)
- Us9m (27 kDa, Protein from Saccharomyces cerevisiae)
- Ms38 (4 kDa, Protein from Saccharomyces cerevisiae)
- Us19m (9 kDa, Protein from Saccharomyces cerevisiae)
- Bl21m (13 kDa, Protein from Saccharomyces cerevisiae)
- Ul16m (22 kDa, Protein from Saccharomyces cerevisiae)
- Ul5m (31 kDa, Protein from Saccharomyces cerevisiae)
- Ml50 (30 kDa, Protein from Saccharomyces cerevisiae)
- Ul4m (28 kDa, Protein from Saccharomyces cerevisiae)
- Bs1m (39 kDa, Protein from Saccharomyces cerevisiae)
- Ul29m (26 kDa, Protein from Saccharomyces cerevisiae)
- Yeast mitochondrial ribosome - class b (Complex from Saccharomyces cerevisiae)
- Bl27m (39 kDa, Protein from Saccharomyces cerevisiae)
- Ms41 (11 kDa, Protein from Saccharomyces cerevisiae)
- Unknown protein sequence 2 (12 kDa, Protein from Saccharomyces cerevisiae)
- Ul22m (25 kDa, Protein from Saccharomyces cerevisiae)
- Us17m (27 kDa, Protein from Saccharomyces cerevisiae)
- Us5m (33 kDa, Protein from Saccharomyces cerevisiae)
- Bs16m (13 kDa, Protein from Saccharomyces cerevisiae)
- Ms42 (29 kDa, Protein from Saccharomyces cerevisiae)
- Bl31m (20 kDa, Protein from Saccharomyces cerevisiae)
- Bl34m (5 kDa, Protein from Saccharomyces cerevisiae)
- Ul15m (24 kDa, Protein from Saccharomyces cerevisiae)
- Bs21m (10 kDa, Protein from Saccharomyces cerevisiae)
- Ml57 (23 kDa, Protein from Saccharomyces cerevisiae)
- Ms47 (51 kDa, Protein from Saccharomyces cerevisiae)
- Ms44 (39 kDa, Protein from Saccharomyces cerevisiae)
- Us4m (56 kDa, Protein from Saccharomyces cerevisiae)
- Ms45 (36 kDa, Protein from Saccharomyces cerevisiae)
- Bl33m (7 kDa, Protein from Saccharomyces cerevisiae)
- Ms26 (26 kDa, Protein from Saccharomyces cerevisiae)
- Ul6m (21 kDa, Protein from Saccharomyces cerevisiae)
- Ml58 (20 kDa, Protein from Saccharomyces cerevisiae)
- Bl19m (17 kDa, Protein from Saccharomyces cerevisiae)
- Sodium ion (22 Da, Ligand)
- Trna (24 kDa, RNA from Saccharomyces cerevisiae)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Ml44 (36 kDa, Protein from Saccharomyces cerevisiae)
- Bl28m (25 kDa, Protein from Saccharomyces cerevisiae)
- Us12m (13 kDa, Protein from Saccharomyces cerevisiae)
- Us10m (21 kDa, Protein from Saccharomyces cerevisiae)
- Ul24m (33 kDa, Protein from Saccharomyces cerevisiae)
- Ms23 (27 kDa, Protein from Saccharomyces cerevisiae)
- Bl36m (4 kDa, Protein from Saccharomyces cerevisiae)
- Ml41 (14 kDa, Protein from Saccharomyces cerevisiae)
- Ul30m (9 kDa, Protein from Saccharomyces cerevisiae)
- Unknown protein sequence 1 (8 kDa, Protein from Saccharomyces cerevisiae)
- Ms29 (45 kDa, Protein from Saccharomyces cerevisiae)
- Ml49 (12 kDa, Protein from Saccharomyces cerevisiae)
- Us14m (13 kDa, Protein from Saccharomyces cerevisiae)
- Us15m (29 kDa, Protein from Saccharomyces cerevisiae)
- Ul23m (24 kDa, Protein from Saccharomyces cerevisiae)
- Us2m (29 kDa, Protein from Saccharomyces cerevisiae)
- Ul14m (14 kDa, Protein from Saccharomyces cerevisiae)
- Ml46 (32 kDa, Protein from Saccharomyces cerevisiae)
- Ms33 (11 kDa, Protein from Saccharomyces cerevisiae)
- Ml60 (14 kDa, Protein from Saccharomyces cerevisiae)
- Ul13m (18 kDa, Protein from Saccharomyces cerevisiae)
- Ml67 (25 kDa, Protein from Saccharomyces cerevisiae)
- 15s ribosomal rna (528 kDa, RNA from Saccharomyces cerevisiae)
- Us11m (16 kDa, Protein from Saccharomyces cerevisiae)
- Ml43 (15 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Ml40 (13 kDa, Protein from Saccharomyces cerevisiae)
- Ul2m (43 kDa, Protein from Saccharomyces cerevisiae)
- Ms37 (10 kDa, Protein from Saccharomyces cerevisiae)
- Ml38 (40 kDa, Protein from Saccharomyces cerevisiae)
- Ml59 (18 kDa, Protein from Saccharomyces cerevisiae)
- Us7m (18 kDa, Protein from Saccharomyces cerevisiae)
- Bl35m (7 kDa, Protein from Saccharomyces cerevisiae)
- Us3m (47 kDa, Protein from Saccharomyces cerevisiae)
- 21s ribosomal rna (1 MDa, RNA from Saccharomyces cerevisiae)
- Ms43 (36 kDa, Protein from Saccharomyces cerevisiae)
- Bl17m (26 kDa, Protein from Saccharomyces cerevisiae)
- Bl9m (8 kDa, Protein from Saccharomyces cerevisiae)
- Ms35 (32 kDa, Protein from Saccharomyces cerevisiae)
- Us13m (13 kDa, Protein from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Us8m (17 kDa, Protein from Saccharomyces cerevisiae)
- Ms46 (18 kDa, Protein from Saccharomyces cerevisiae)
- Bs18m (11 kDa, Protein from Saccharomyces cerevisiae)
- Ul3m (27 kDa, Protein from Saccharomyces cerevisiae)
- Bl32m (13 kDa, Protein from Saccharomyces cerevisiae)