IHECRE00001795.6 PREVIOUS JSON
Type | Single donor |
Status | Complete |
Project | ENCODE |
Description | Reference epigenome for mouse forebrain (12.5 day embryonic) |
Live version | IHECRE00001795.7 |
Previous versions | IHECRE00001795.5 IHECRE00001795.4 IHECRE00001795.3 IHECRE00001795.2 IHECRE00001795.1 |
Metadata
Disease ontology curie | ncim:C115222 |
Biomaterial type | Primary Tissue |
Donor id | ENCDO956IXV |
Disease ontology uri | https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222 |
Donor life stage | embryonic |
Donor ethnicity | NA |
Donor sex | Mixed |
Donor age unit | day |
Biological replicates | ENCBS617DPG |
Tissue type | forebrain |
Taxon id | 10090 |
Species | Mus musculus |
Disease | healthy |
Sample ontology uri | http://purl.obolibrary.org/obo/UBERON_0001890 |
Donor age | 12 |
Donor health status ontology uri | https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222 |
Collection method | unknown |
Donor health status ontology curie | ncim:C115222 |
Treatment | NA |
Sample ontology curie | uberon:0001890 |
Tissue depot | forebrain |
Donor health status | healthy |
Biomaterial provider | Len Pennacchio at Joint Genome Institute |
Raw data
Assay Type | Experiment Type | Archive | Primary ID | Secondary ID | URL |
---|---|---|---|---|---|
ATAC-seq | Chromatin Accessibility | ENCODE | ENCSR559FAJ | None | https://www.encodeproject.org/experiments/ENCSR559FAJ |
miRNA-Seq | smRNA-Seq | ENCODE | ENCSR715QTV | None | https://www.encodeproject.org/experiments/ENCSR715QTV |
ChIP-Seq | Histone H3K4me1 | ENCODE | ENCSR243JOL | None | https://www.encodeproject.org/experiments/ENCSR243JOL |
ChIP-Seq | Histone H3K4me2 | ENCODE | ENCSR782SUW | None | https://www.encodeproject.org/experiments/ENCSR782SUW |
ChIP-Seq | Histone H3K4me3 | ENCODE | ENCSR527EUE | None | https://www.encodeproject.org/experiments/ENCSR527EUE |
ChIP-Seq | Histone H3K9ac | ENCODE | ENCSR161UUY | None | https://www.encodeproject.org/experiments/ENCSR161UUY |
ChIP-Seq | Histone H3K27ac | ENCODE | ENCSR966AIB | None | https://www.encodeproject.org/experiments/ENCSR966AIB |
ChIP-Seq | Histone H3K27me3 | ENCODE | ENCSR297CHD | None | https://www.encodeproject.org/experiments/ENCSR297CHD |
ChIP-Seq | Histone H3K36me3 | ENCODE | ENCSR345DDI | None | https://www.encodeproject.org/experiments/ENCSR345DDI |
ChIP-Seq | ChIP-Seq Input | ENCODE | ENCSR523QKO | None | https://www.encodeproject.org/experiments/ENCSR523QKO |
ChIP-Seq | Histone H3K9me3 | ENCODE | ENCSR634GFJ | None | https://www.encodeproject.org/experiments/ENCSR634GFJ |
Bisulfite-Seq | DNA Methylation | ENCODE | ENCSR007JSP | None | https://www.encodeproject.org/experiments/ENCSR007JSP |
RNA-Seq | mRNA-Seq | ENCODE | ENCSR647QBV | None | https://www.encodeproject.org/experiments/ENCSR647QBV |