IHECRE00001805.6 PREVIOUS JSON
Type | Single donor |
Status | Complete |
Project | ENCODE |
Description | Reference epigenome for mouse forebrain (15.5 day embryonic) |
Live version | IHECRE00001805.7 |
Previous versions | IHECRE00001805.5 IHECRE00001805.4 IHECRE00001805.3 IHECRE00001805.2 IHECRE00001805.1 |
Metadata
Disease ontology curie | ncim:C115222 |
Biomaterial type | Primary Tissue |
Donor id | ENCDO956IXV |
Disease ontology uri | https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222 |
Donor life stage | embryonic |
Donor ethnicity | NA |
Donor sex | Mixed |
Donor age unit | day |
Biological replicates | ENCBS811RMD |
Tissue type | forebrain |
Taxon id | 10090 |
Species | Mus musculus |
Disease | healthy |
Sample ontology uri | http://purl.obolibrary.org/obo/UBERON_0001890 |
Donor age | 15 |
Donor health status ontology uri | https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222 |
Collection method | unknown |
Donor health status ontology curie | ncim:C115222 |
Treatment | NA |
Sample ontology curie | uberon:0001890 |
Tissue depot | forebrain |
Donor health status | healthy |
Biomaterial provider | Len Pennacchio at Joint Genome Institute |
Raw data
Assay Type | Experiment Type | Archive | Primary ID | Secondary ID | URL |
---|---|---|---|---|---|
ATAC-seq | Chromatin Accessibility | ENCODE | ENCSR976LWP | None | https://www.encodeproject.org/experiments/ENCSR976LWP |
ChIP-Seq | Histone H3K9me3 | ENCODE | ENCSR668BBX | None | https://www.encodeproject.org/experiments/ENCSR668BBX |
Bisulfite-Seq | DNA Methylation | ENCODE | ENCSR019HJV | None | https://www.encodeproject.org/experiments/ENCSR019HJV |
RNA-Seq | mRNA-Seq | ENCODE | ENCSR752RGN | None | https://www.encodeproject.org/experiments/ENCSR752RGN |
ChIP-Seq | Histone H3K36me3 | ENCODE | ENCSR437SFX | None | https://www.encodeproject.org/experiments/ENCSR437SFX |
ChIP-Seq | ChIP-Seq Input | ENCODE | ENCSR880HDV | None | https://www.encodeproject.org/experiments/ENCSR880HDV |
ChIP-Seq | Histone H3K27ac | ENCODE | ENCSR691NQH | None | https://www.encodeproject.org/experiments/ENCSR691NQH |
ChIP-Seq | Histone H3K27me3 | ENCODE | ENCSR564XSR | None | https://www.encodeproject.org/experiments/ENCSR564XSR |
ChIP-Seq | Histone H3K4me1 | ENCODE | ENCSR875KRK | None | https://www.encodeproject.org/experiments/ENCSR875KRK |
ChIP-Seq | Histone H3K4me3 | ENCODE | ENCSR022KDE | None | https://www.encodeproject.org/experiments/ENCSR022KDE |
ChIP-Seq | Histone H3K9ac | ENCODE | ENCSR717XCU | None | https://www.encodeproject.org/experiments/ENCSR717XCU |
ChIP-Seq | Histone H3K4me2 | ENCODE | ENCSR402ZLE | None | https://www.encodeproject.org/experiments/ENCSR402ZLE |
miRNA-Seq | smRNA-Seq | ENCODE | ENCSR758VDY | None | https://www.encodeproject.org/experiments/ENCSR758VDY |