Provide the result of a sequence similarity search or a multiple sequence alignment
Format of the input sequence similarity search result or multiple sequence alignment to be processed.
Output format for the alignment.
Amount of HTML markup to be used in the result.
Use Cascading Style Sheets
Compute percent identities with respect to aligned, hit or reference.
Show or hide the aligned sequences.
Show or hide the ruler showing the sequence coordinates.
Width of output alignment.
Choose basic style of coloring.
Choose color map
Show or hide consensus sequence derived from the alignment.
Basic style of consensus coloring
Choose group map
Choose consensus color map
Choose consensus group map
Count gaps during consensus compuatations