Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 09Y

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 48


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C14 C C1 N N N 0 3.983 -2.392 0.132
2 C19 C C2 N Y N 0 4.145 1.3 0.113
3 C20 C C3 N Y N 0 5.508 1.506 0.333
4 C01 C C4 N N N 0 -8.453 0.282 1.439
5 C03 C C5 N Y N 0 -6.263 0.469 0.538
6 C04 C C6 N Y N 0 -4.886 0.594 0.674
7 C05 C C7 N Y N 0 -4.1 0.647 -0.463
8 C06 C C8 N N N 0 -2.602 0.782 -0.359
9 C07 C C9 N N N 0 -1.968 -0.609 -0.302
10 C09 C C10 N N N 0 0.26 -1.581 -0.137
11 C11 C C11 N N N 0 1.732 -1.449 -0.034
12 C12 C C12 N N N 0 2.531 -2.581 0.032
13 C17 C C13 N N N 0 3.597 -0.073 0.085
14 C21 C C14 N Y N 0 6.014 2.789 0.358
15 C22 C C15 N Y N 0 5.173 3.871 0.164
16 C23 C C16 N Y N 0 3.821 3.674 -0.056
17 C24 C C17 N Y N 0 3.302 2.395 -0.076
18 C25 C C18 N N N 0 1.829 2.183 -0.316
19 C26 C C19 N Y N 0 -4.721 0.573 -1.703
20 C27 C C20 N Y N 0 -6.095 0.449 -1.763
21 N08 N N1 N N N 0 -0.512 -0.479 -0.201
22 N16 N N2 N N N 0 4.459 -1.128 0.155
23 N18 N N3 N N N 0 2.299 -0.233 -0.004
24 N28 N N4 N Y N 0 -6.818 0.396 -0.66
25 O02 O O1 N N N 0 -7.046 0.416 1.645
26 O10 O O2 N N N 0 -0.25 -2.684 -0.163
27 O13 O O3 N N N 0 1.987 -3.823 0.004
28 O15 O O4 N N N 0 4.737 -3.348 0.198
29 H1 H H1 N N N 0 6.166 0.662 0.485
30 H2 H H2 N N N 0 -8.961 0.252 2.403
31 H3 H H3 N N N 0 -8.819 1.131 0.862
32 H4 H H4 N N N 0 -8.654 -0.641 0.894
33 H5 H H5 N N N 0 -4.436 0.65 1.654
34 H6 H H6 N N N 0 -2.224 1.318 -1.229
35 H7 H H7 N N N 0 -2.349 1.334 0.546
36 H11 H H11 N N N 0 5.573 4.873 0.184
37 H8 H H8 N N N 0 -2.346 -1.146 0.568
38 H9 H H9 N N N 0 -2.221 -1.161 -1.207
39 H10 H H10 N N N 0 7.068 2.95 0.529
40 H12 H H12 N N N 0 3.17 4.522 -0.206
41 H13 H H13 N N N 0 1.321 2.048 0.639
42 H14 H H14 N N N 0 1.415 3.051 -0.828
43 H15 H H15 N N N 0 1.686 1.295 -0.932
44 H16 H H16 N N N 0 -4.136 0.612 -2.61
45 H17 H H17 N N N 0 -6.583 0.392 -2.724
46 H18 H H18 N N N 0 -0.105 0.401 -0.179
47 H19 H H19 N N N 0 5.414 -0.97 0.221
48 H20 H H20 N N N 0 2.637 -4.538 0.055