Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 09Y    

Bonds between two atoms of the molecule

Total Number of Bonds: 50


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O15 C14 O C doub 1.22 N N
2 O13 C12 O C sing 1.36 N N
3 C14 C12 C C sing 1.47 N N
4 C14 N16 C N sing 1.35 N N
5 C12 C11 C C doub 1.39 N N
6 N16 C17 N C sing 1.36 N N
7 O10 C09 O C doub 1.22 N N
8 C25 C24 C C sing 1.51 N N
9 C11 C09 C C sing 1.48 N N
10 C11 N18 C N sing 1.34 N N
11 C09 N08 C N sing 1.35 N N
12 C17 N18 C N doub 1.31 N N
13 C17 C19 C C sing 1.48 N N
14 C24 C19 C C doub 1.39 N Y
15 C24 C23 C C sing 1.38 N Y
16 C19 C20 C C sing 1.4 N Y
17 N08 C07 N C sing 1.47 N N
18 C23 C22 C C doub 1.38 N Y
19 C07 C06 C C sing 1.53 N N
20 C20 C21 C C doub 1.38 N Y
21 C22 C21 C C sing 1.38 N Y
22 C06 C05 C C sing 1.51 N N
23 C01 O02 C O sing 1.43 N N
24 C05 C04 C C doub 1.38 N Y
25 C05 C26 C C sing 1.39 N Y
26 C04 C03 C C sing 1.39 N Y
27 C26 C27 C C doub 1.38 N Y
28 C03 O02 C O sing 1.36 N N
29 C03 N28 C N doub 1.32 N Y
30 C27 N28 C N sing 1.32 N Y
31 C20 H1 C H sing 1.08 N N
32 C01 H2 C H sing 1.09 N N
33 C01 H3 C H sing 1.09 N N
34 C01 H4 C H sing 1.09 N N
35 C04 H5 C H sing 1.08 N N
36 C06 H6 C H sing 1.09 N N
37 C06 H7 C H sing 1.09 N N
38 C07 H8 C H sing 1.09 N N
39 C07 H9 C H sing 1.09 N N
40 C21 H10 C H sing 1.08 N N
41 C22 H11 C H sing 1.08 N N
42 C23 H12 C H sing 1.08 N N
43 C25 H13 C H sing 1.09 N N
44 C25 H14 C H sing 1.09 N N
45 C25 H15 C H sing 1.09 N N
46 C26 H16 C H sing 1.08 N N
47 C27 H17 C H sing 1.08 N N
48 N08 H18 N H sing 0.97 N N
49 N16 H19 N H sing 0.97 N N
50 O13 H20 O H sing 0.97 N N