Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 0D3

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 43


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 0.977 0.44 0.55
2 O1 O O1 N N N 0 1.072 -0.438 1.382
3 C2 C C2 S N N 0 2.219 1.056 -0.04
4 C3 C C3 N N N 0 3.456 0.4 0.576
5 C1' C C4 N Y N 0 3.531 -1.04 0.14
6 C2' C C5 N Y N 0 4.075 -1.363 -1.09
7 C3' C C6 N Y N 0 4.144 -2.684 -1.49
8 C4' C C7 N Y N 0 3.669 -3.683 -0.661
9 C5' C C8 N Y N 0 3.126 -3.361 0.568
10 C6' C C9 N Y N 0 3.061 -2.04 0.971
11 C' C C10 N N N 0 2.235 2.556 0.258
12 S' S S1 N N N 0 3.639 3.327 -0.593
13 N N N1 N N N 0 -0.24 0.859 0.15
14 CA C C11 R N N 0 -1.447 0.256 0.72
15 C C C12 N N N 0 -2.59 0.406 -0.251
16 O O O3 N N N 0 -2.413 0.961 -1.315
17 CB C C13 N N N 0 -1.798 0.96 2.033
18 N1 N N2 N N N 0 -3.808 -0.078 0.062
19 CA1 C C14 N N N 0 -4.919 0.067 -0.882
20 C4 C C15 N N N 0 -6.161 -0.554 -0.296
21 O2 O O5 N N N 0 -6.122 -1.067 0.802
22 N2 N N3 N N N 0 -7.314 -0.539 -0.992
23 H2 H H2 N N N 0 2.224 0.9 -1.119
24 H31 H H3 N N N 0 4.35 0.928 0.244
25 H32 H H4 N N N 0 3.389 0.447 1.663
26 H2' H H5 N N N 0 4.446 -0.582 -1.737
27 H3' H H6 N N N 0 4.569 -2.936 -2.451
28 H4' H H7 N N N 0 3.722 -4.715 -0.974
29 H5' H H8 N N N 0 2.754 -4.141 1.216
30 H6' H H9 N N N 0 2.64 -1.788 1.933
31 H'1 H H10 N N N 0 1.306 3.007 -0.092
32 H'2 H H11 N N N 0 2.331 2.712 1.333
33 HS' H H12 N N N 0 3.529 4.622 -0.247
34 H H H13 N N N 0 -0.316 1.561 -0.515
35 HA H H15 N N N 0 -1.269 -0.802 0.911
36 HB1 H H16 N N N 0 -2.696 0.511 2.457
37 HB2 H H17 N N N 0 -0.972 0.851 2.735
38 HB3 H H18 N N N 0 -1.976 2.018 1.841
39 H1 H H20 N N N 0 -3.949 -0.523 0.912
40 HA2 H H22 N N N 0 -5.097 1.125 -1.073
41 HA3 H H23 N N N 0 -4.669 -0.434 -1.817
42 HN1 H H25 N N N 0 -7.346 -0.128 -1.871
43 HN2 H H26 N N N 0 -8.114 -0.938 -0.615