Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 0D3    

Bonds between two atoms of the molecule

Total Number of Bonds: 43


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 O1 C O doub 1.21 N N
2 C1 C2 C C sing 1.51 N N
3 C2 C3 C C sing 1.53 N N
4 C2 C' C C sing 1.53 N N
5 C2 H2 C H sing 1.09 N N
6 C3 C1' C C sing 1.51 N N
7 C3 H31 C H sing 1.09 N N
8 C3 H32 C H sing 1.09 N N
9 C1' C2' C C doub 1.38 N Y
10 C1' C6' C C sing 1.38 N Y
11 C2' C3' C C sing 1.38 N Y
12 C2' H2' C H sing 1.08 N N
13 C3' C4' C C doub 1.38 N Y
14 C3' H3' C H sing 1.08 N N
15 C4' C5' C C sing 1.38 N Y
16 C4' H4' C H sing 1.08 N N
17 C5' C6' C C doub 1.38 N Y
18 C5' H5' C H sing 1.08 N N
19 C6' H6' C H sing 1.08 N N
20 C' S' C S sing 1.81 N N
21 C' H'1 C H sing 1.09 N N
22 C' H'2 C H sing 1.09 N N
23 S' HS' S H sing 1.34 N N
24 N CA N C sing 1.46 N N
25 N H N H sing 0.97 N N
26 CA C C C sing 1.51 N N
27 CA CB C C sing 1.53 N N
28 CA HA C H sing 1.09 N N
29 C O C O doub 1.21 N N
30 CB HB1 C H sing 1.09 N N
31 CB HB2 C H sing 1.09 N N
32 CB HB3 C H sing 1.09 N N
33 N1 CA1 N C sing 1.47 N N
34 N1 H1 N H sing 0.97 N N
35 CA1 C4 C C sing 1.51 N N
36 CA1 HA2 C H sing 1.09 N N
37 CA1 HA3 C H sing 1.09 N N
38 C4 O2 C O doub 1.21 N N
39 N2 HN1 N H sing 0.97 N N
40 N2 HN2 N H sing 0.97 N N
41 C1 N C N sing 1.35 N N
42 C N1 C N sing 1.35 N N
43 C4 N2 C N sing 1.35 N N