Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 1PV

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 64


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 4.498 3.179 -2.802
2 C3 C C3 N N N 0 3.575 1.935 -0.921
3 C5 C C5 N Y N 0 3.078 0.694 -0.317
4 C6 C C6 N Y N 0 3.813 -0.256 0.372
5 C8 C C8 N Y N 0 1.724 -1.021 0.385
6 C9 C C9 N Y N 0 0.548 -1.74 0.555
7 C13 C C13 N Y N 0 -3.515 -0.64 1.329
8 C15 C C15 N Y N 0 -3.909 1.707 1.604
9 C16 C C16 N Y N 0 -5.197 1.549 1.094
10 O19 O O19 N N N 0 -5.701 4.076 1.361
11 C20 C C20 N Y N 0 -5.638 0.281 0.707
12 C22 C C22 N Y N 0 -4.791 -0.806 0.822
13 C24 C C24 N N N 0 -1.578 -4.597 -0.564
14 C27 C C27 N Y N 0 -0.672 -0.039 -0.644
15 C28 C C28 N Y N 0 0.488 0.683 -0.823
16 C29 C C29 N Y N 0 1.688 0.198 -0.311
17 C30 C C30 N N N 0 -1.974 0.48 -1.2
18 C31 C C31 N N N 0 -2.056 0.708 -2.71
19 C32 C C32 N N N 0 -1.986 1.904 -1.757
20 C33 C C33 N Y N 0 5.263 -0.19 0.632
21 C34 C C34 N Y N 0 5.897 -1.213 1.342
22 C35 C C35 N Y N 0 7.252 -1.146 1.581
23 C36 C C36 N Y N 0 7.988 -0.065 1.119
24 F37 F F37 N N N 0 9.316 -0.004 1.356
25 C38 C C38 N Y N 0 7.365 0.953 0.413
26 C39 C C39 N Y N 0 6.011 0.894 0.162
27 O7 O O7 N Y N 0 2.998 -1.247 0.769
28 O4 O O4 N N N 0 3.603 2.961 -0.267
29 N2 N N2 N N N 0 4.002 1.939 -2.199
30 C10 C C10 N Y N 0 -0.642 -1.252 0.039
31 N11 N N11 N N N 0 -1.823 -1.978 0.216
32 S23 S S23 N N N 0 -2.349 -3.006 -0.97
33 O25 O O25 N N N 0 -1.794 -2.474 -2.166
34 O26 O O26 N N N 0 -3.755 -3.071 -0.781
35 C12 C C12 N N N 0 -2.596 -1.829 1.452
36 F21 F F21 N N N 0 -6.885 0.119 0.212
37 B17 B B17 N N N 0 -6.15 2.789 0.961
38 O18 O O18 N N N 0 -7.461 2.625 0.442
39 C14 C C14 N Y N 0 -3.076 0.614 1.718
40 H1 H H1 N N N 0 4.796 2.987 -3.833
41 H2 H H2 N N N 0 3.711 3.932 -2.785
42 H3 H H3 N N N 0 5.358 3.539 -2.237
43 H4 H H4 N N N 0 0.561 -2.679 1.088
44 H5 H H5 N N N 0 -3.562 2.684 1.905
45 H6 H H6 N N N 0 -6.357 4.776 1.242
46 H7 H H7 N N N 0 -5.126 -1.786 0.516
47 H8 H H8 N N N 0 -1.783 -4.845 0.477
48 H9 H H9 N N N 0 -1.987 -5.374 -1.21
49 H10 H H10 N N N 0 -0.501 -4.529 -0.716
50 H11 H H11 N N N 0 0.466 1.62 -1.358
51 H12 H H12 N N N 0 -2.874 0.129 -0.694
52 H13 H H13 N N N 0 -1.169 0.484 -3.302
53 H14 H H14 N N N 0 -3.01 0.508 -3.198
54 H15 H H15 N N N 0 -2.894 2.491 -1.619
55 H16 H H16 N N N 0 -1.053 2.467 -1.723
56 H17 H H17 N N N 0 5.325 -2.055 1.703
57 H18 H H18 N N N 0 7.743 -1.936 2.13
58 H19 H H19 N N N 0 7.943 1.793 0.056
59 H20 H H20 N N N 0 5.527 1.688 -0.387
60 H21 H H21 N N N 0 3.98 1.121 -2.72
61 H22 H H22 N N N 0 -1.916 -1.677 2.29
62 H23 H H23 N N N 0 -3.187 -2.729 1.621
63 H24 H H24 N N N 0 -7.973 3.445 0.398
64 H25 H H25 N N N 0 -2.078 0.736 2.113