Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 1VT

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 61


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C01 C C01 N Y N 0 -2.036 1.237 0.221
2 C02 C C02 N N N 0 -2.377 0.079 1.051
3 O01 O O01 N N N 0 -2.419 0.191 2.263
4 N01 N N01 N N N 0 -2.644 -1.109 0.474
5 C1 C C1 N N N 0 -2.985 -2.266 1.304
6 C03 C C03 N Y N 0 -3.237 -3.461 0.421
7 C04 C C04 N Y N 0 -2.193 -4.303 0.083
8 C05 C C05 N Y N 0 -2.424 -5.399 -0.727
9 C06 C C06 N Y N 0 -3.698 -5.654 -1.199
10 C07 C C07 N Y N 0 -4.741 -4.812 -0.861
11 C08 C C08 N Y N 0 -4.512 -3.72 -0.046
12 C09 C C09 N Y N 0 -0.756 1.556 -0.145
13 N N N N N N 0 0.368 0.832 0.22
14 C10 C C10 N N N 0 1.588 1.229 -0.192
15 O O O N N N 0 1.703 2.219 -0.882
16 C11 C C11 N N N 0 2.811 0.442 0.205
17 C2 C C2 N N N 0 4.057 1.101 -0.389
18 N23 N N23 N N N 0 5.248 0.334 -0.002
19 C25 C C25 N N N 0 6.467 0.938 -0.557
20 C12 C C12 N Y N 0 7.666 0.126 -0.14
21 C13 C C13 N Y N 0 8.102 -0.919 -0.932
22 C14 C C14 N Y N 0 9.201 -1.665 -0.549
23 C15 C C15 N Y N 0 9.865 -1.365 0.626
24 C16 C C16 N Y N 0 9.428 -0.319 1.418
25 C17 C C17 N Y N 0 8.332 0.429 1.033
26 S S S N Y N 0 -0.729 2.961 -1.108
27 C18 C C18 N Y N 0 -2.472 3.146 -1.034
28 C19 C C19 N Y N 0 -3.021 2.166 -0.307
29 C20 C C20 N Y N 0 -4.478 2.046 -0.059
30 C21 C C21 N Y N 0 -5.202 3.145 0.401
31 C22 C C22 N Y N 0 -6.557 3.027 0.631
32 C23 C C23 N Y N 0 -7.198 1.822 0.405
33 C24 C C24 N Y N 0 -6.485 0.728 -0.051
34 C C C N Y N 0 -5.13 0.836 -0.29
35 H1 H H1 N N N 0 -2.611 -1.197 -0.492
36 H2 H H2 N N N 0 -2.16 -2.483 1.982
37 H3 H H3 N N N 0 -3.882 -2.047 1.883
38 H4 H H4 N N N 0 -1.198 -4.103 0.451
39 H5 H H5 N N N 0 -1.608 -6.056 -0.992
40 H6 H H6 N N N 0 -3.878 -6.51 -1.832
41 H7 H H7 N N N 0 -5.736 -5.011 -1.23
42 H8 H H8 N N N 0 -5.328 -3.065 0.221
43 H9 H H9 N N N 0 0.277 0.04 0.773
44 H10 H H10 N N N 0 2.893 0.422 1.292
45 H11 H H11 N N N 0 2.724 -0.578 -0.171
46 H12 H H12 N N N 0 3.974 1.12 -1.476
47 H13 H H13 N N N 0 4.143 2.12 -0.013
48 H14 H H14 N N N 0 5.164 -0.632 -0.284
49 H16 H H16 N N N 0 6.401 0.957 -1.645
50 H17 H H17 N N N 0 6.57 1.957 -0.182
51 H18 H H18 N N N 0 7.583 -1.154 -1.85
52 H19 H H19 N N N 0 9.542 -2.482 -1.168
53 H20 H H20 N N N 0 10.723 -1.947 0.925
54 H21 H H21 N N N 0 9.946 -0.085 2.336
55 H22 H H22 N N N 0 7.991 1.246 1.652
56 H23 H H23 N N N 0 -3.026 3.94 -1.512
57 H24 H H24 N N N 0 -4.703 4.086 0.578
58 H25 H H25 N N N 0 -7.119 3.878 0.987
59 H26 H H26 N N N 0 -8.259 1.735 0.586
60 H27 H H27 N N N 0 -6.99 -0.21 -0.225
61 H28 H H28 N N N 0 -4.575 -0.018 -0.651