Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 21V

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 57


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 OE2 O OE2 N N N 0 -6.37 4.518 0.432
2 CD C CD N N N 0 -6.777 3.334 -0.05
3 OE1 O OE1 N N N 0 -7.63 3.291 -0.905
4 CG C CG N N N 0 -6.17 2.057 0.473
5 CB C CB N N N 0 -6.806 0.861 -0.238
6 CA C CA S N N 0 -6.189 -0.434 0.293
7 CT C CT N N N 0 -6.9 -1.615 -0.317
8 O1 O O1 N N N 0 -6.283 -2.414 -0.981
9 O2 O O2 N N N 0 -8.218 -1.78 -0.122
10 N N N N N N 0 -4.769 -0.482 -0.063
11 C C C N N N 0 -3.913 -1.214 0.676
12 O O O N N N 0 -4.319 -1.836 1.638
13 C11 C C11 N Y N 0 -2.48 -1.262 0.317
14 C12 C C12 N Y N 0 -2.009 -0.545 -0.785
15 C13 C C13 N Y N 0 -0.67 -0.593 -1.114
16 C16 C C16 N Y N 0 -1.59 -2.019 1.08
17 C15 C C15 N Y N 0 -0.254 -2.059 0.74
18 C14 C C14 N Y N 0 0.205 -1.35 -0.356
19 C10 C C10 N N N 0 1.666 -1.399 -0.723
20 C9 C C9 N N N 0 2.411 -0.276 0.002
21 C6 C C6 S N N 0 3.895 -0.326 -0.37
22 C7 C C7 N N N 0 4.515 -1.628 0.155
23 N8 N N8 N N N 0 5.923 -1.653 -0.26
24 C5 C C5 N N N 0 4.624 0.856 0.27
25 C4A C C4A N N N 0 6.112 0.694 0.126
26 C4 C C4 N N N 0 6.946 1.827 0.25
27 O4 O O4 N N N 0 6.458 2.927 0.467
28 C8A C C8A N N N 0 6.685 -0.515 -0.12
29 N1 N N1 N N N 0 8.049 -0.6 -0.233
30 C2 C C2 N N N 0 8.818 0.516 -0.103
31 N3 N N3 N N N 0 8.276 1.691 0.131
32 NA2 N NA2 N N N 0 10.179 0.413 -0.218
33 H1 H H1 N N N 0 -6.788 5.309 0.066
34 H2 H H2 N N N 0 -5.096 2.063 0.286
35 H3 H H3 N N N 0 -6.352 1.982 1.545
36 H4 H H4 N N N 0 -7.879 0.856 -0.052
37 H5 H H5 N N N 0 -6.624 0.937 -1.311
38 H6 H H6 N N N 0 -6.293 -0.468 1.377
39 H7 H H7 N N N 0 -8.629 -2.552 -0.533
40 H8 H H8 N N N 0 -4.445 0.014 -0.831
41 H9 H H9 N N N 0 -2.691 0.047 -1.377
42 H10 H H10 N N N 0 -0.305 -0.038 -1.966
43 H11 H H11 N N N 0 -1.947 -2.573 1.936
44 H12 H H12 N N N 0 0.435 -2.645 1.33
45 H13 H H13 N N N 0 2.083 -2.362 -0.428
46 H14 H H14 N N N 0 1.775 -1.271 -1.8
47 H15 H H15 N N N 0 1.994 0.687 -0.294
48 H16 H H16 N N N 0 2.302 -0.404 1.079
49 H17 H H17 N N N 0 4.002 -0.281 -1.454
50 H18 H H18 N N N 0 4.45 -1.655 1.243
51 H19 H H19 N N N 0 3.989 -2.484 -0.267
52 H20 H H20 N N N 0 4.313 1.78 -0.218
53 H26 H H26 N N N 0 6.312 -2.461 -0.628
54 H21 H H21 N N N 0 4.371 0.905 1.329
55 H24 H H24 N N N 0 10.587 -0.45 -0.391
56 H25 H H25 N N N 0 10.734 1.202 -0.127
57 H22 H H22 N N N 0 8.467 -1.458 -0.405