Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 2D8

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 26


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C4 C C4 N N N 0 0.45 -0.589 -0.065
2 C5 C C5 R N N 0 1.631 0.377 0.051
3 C6 C C6 N N N 0 2.912 -0.407 0.174
4 C7 C C7 N N N 0 1.692 1.26 -1.197
5 N1 N N1 N N N 0 -2.57 -1.545 -1.056
6 P P P N N N 0 -1.105 0.315 0.233
7 C1 C C1 N N N 0 -3.804 -0.103 0.491
8 C2 C C2 S N N 0 -2.498 -0.861 0.242
9 O31 O O31 N N N 0 -1.033 1.004 1.54
10 O32 O O32 N N N 0 -1.327 1.401 -0.935
11 O61 O O61 N N N 0 4.084 0.235 0.289
12 O62 O O62 N N N 0 2.883 -1.615 0.17
13 H1 H H1 N N N 0 0.433 -1.023 -1.064
14 H2 H H2 N N N 0 0.556 -1.383 0.674
15 H3 H H3 N N N 0 1.503 1.004 0.934
16 H4 H H4 N N N 0 0.766 1.828 -1.286
17 H5 H H5 N N N 0 2.534 1.949 -1.114
18 H6 H H6 N N N 0 1.821 0.634 -2.079
19 H7 H H7 N N N 0 -2.709 -0.885 -1.806
20 H8 H H8 N N N 0 -1.746 -2.105 -1.216
21 H10 H H10 N N N 0 -4.637 -0.805 0.496
22 H11 H H11 N N N 0 -3.751 0.405 1.454
23 H12 H H12 N N N 0 -3.954 0.633 -0.3
24 H13 H H13 N N N 0 -2.348 -1.596 1.032
25 H14 H H14 N N N 0 -1.383 1.019 -1.822
26 H15 H H15 N N N 0 4.879 -0.311 0.366