Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 2DE

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 49


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 -1.608 2.065 0.128
2 O1 O O1 N N N 0 -2.387 0.894 0.384
3 C2 C C2 N N N 0 -0.149 1.755 0.347
4 C3 C C3 N N N 0 0.744 2.161 -0.521
5 C5 C C5 N N N 0 2.202 1.852 -0.302
6 C6 C C6 N N N 0 2.761 1.13 -1.53
7 C7 C C7 N N N 0 4.219 0.821 -1.311
8 C8 C C8 N N N 0 4.641 -0.418 -1.36
9 C9 C C9 N N N 0 6.115 -0.717 -1.273
10 PA P PA N N N 0 -3.991 0.861 0.248
11 PB P PB N N N 0 -5.874 -1.424 0.104
12 C10 C C10 N N N 0 3.651 -1.546 -1.502
13 C11 C C11 N N N 0 6.487 -1.031 0.178
14 C12 C C12 N N N 0 7.962 -1.33 0.264
15 C13 C C13 N N N 0 8.719 -0.656 1.094
16 C14 C C14 N N N 0 8.115 0.419 1.962
17 C15 C C15 N N N 0 10.194 -0.954 1.181
18 O1A O O1A N N N 0 -4.38 1.315 -1.106
19 O1B O O1B N N N 0 -6.244 -1.119 -1.297
20 O2A O O2A N N N 0 -4.643 1.837 1.349
21 O2B O O2B N N N 0 -5.642 -3.009 0.265
22 O3A O O3A N N N 0 -4.518 -0.642 0.482
23 O3B O O3B N N N 0 -7.058 -0.951 1.087
24 H1 H H1 N N N 0 -1.761 2.384 -0.903
25 H1A H H1A N N N 0 -1.916 2.862 0.804
26 H2 H H2 N N N 0 0.16 1.2 1.22
27 H3 H H3 N N N 0 0.435 2.717 -1.395
28 H5 H H5 N N N 0 2.751 2.781 -0.146
29 H5A H H5A N N N 0 2.311 1.214 0.575
30 H6 H H6 N N N 0 2.212 0.201 -1.687
31 H6A H H6A N N N 0 2.652 1.768 -2.407
32 H7 H H7 N N N 0 4.917 1.621 -1.114
33 H9 H H9 N N N 0 6.35 -1.575 -1.902
34 H9A H H9A N N N 0 6.682 0.149 -1.613
35 H10 H H10 N N N 0 3.415 -1.691 -2.556
36 H10A H H10A N N N 0 4.082 -2.461 -1.096
37 H10B H H10B N N N 0 2.74 -1.3 -0.956
38 H11 H H11 N N N 0 6.253 -0.173 0.807
39 H11A H H11A N N N 0 5.921 -1.898 0.518
40 H12 H H12 N N N 0 8.395 -2.1 -0.357
41 H14 H H14 N N N 0 7.349 -0.019 2.601
42 H14A H H14A N N N 0 8.893 0.866 2.581
43 H14B H H14B N N N 0 7.668 1.186 1.33
44 HO3B H HO3B N N N 0 -6.883 -1.12 2.023
45 H15 H H15 N N N 0 10.733 -0.33 0.468
46 H15A H H15A N N N 0 10.548 -0.743 2.19
47 H15B H H15B N N N 0 10.366 -2.005 0.947
48 HO2A H HO2A N N N 0 -4.43 1.599 2.262
49 HO2B H HO2B N N N 0 -6.42 -3.543 0.053