Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 2DE    

Bonds between two atoms of the molecule

Total Number of Bonds: 48


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 O1 C O sing 1.43 N N
2 C1 C2 C C sing 1.51 N N
3 O1 PA O P sing 1.61 N N
4 C2 C3 C C doub 1.31 N N
5 C3 C5 C C sing 1.51 N N
6 C5 C6 C C sing 1.53 E N
7 C6 C7 C C sing 1.51 N N
8 C7 C8 C C doub 1.31 N N
9 C8 C9 C C sing 1.51 N N
10 C8 C10 C C sing 1.51 N N
11 C9 C11 C C sing 1.53 N N
12 PA O1A P O doub 1.48 N N
13 PA O2A P O sing 1.61 N N
14 PA O3A P O sing 1.61 N N
15 PB O1B P O doub 1.48 N N
16 PB O2B P O sing 1.61 E N
17 PB O3A P O sing 1.61 N N
18 PB O3B P O sing 1.61 N N
19 C11 C12 C C sing 1.51 N N
20 C12 C13 C C doub 1.31 N N
21 C13 C14 C C sing 1.51 N N
22 C13 C15 C C sing 1.51 N N
23 C1 H1 C H sing 1.09 N N
24 C1 H1A C H sing 1.09 N N
25 C2 H2 C H sing 1.08 N N
26 C3 H3 C H sing 1.08 N N
27 C5 H5 C H sing 1.09 N N
28 C5 H5A C H sing 1.09 N N
29 C6 H6 C H sing 1.09 N N
30 C6 H6A C H sing 1.09 N N
31 C7 H7 C H sing 1.08 N N
32 C9 H9 C H sing 1.09 N N
33 C9 H9A C H sing 1.09 N N
34 C10 H10 C H sing 1.09 N N
35 C10 H10A C H sing 1.09 N N
36 C10 H10B C H sing 1.09 N N
37 C11 H11 C H sing 1.09 N N
38 C11 H11A C H sing 1.09 N N
39 C12 H12 C H sing 1.08 N N
40 C14 H14 C H sing 1.09 N N
41 C14 H14A C H sing 1.09 N N
42 C14 H14B C H sing 1.09 N N
43 C15 H15 C H sing 1.09 N N
44 C15 H15A C H sing 1.09 N N
45 C15 H15B C H sing 1.09 N N
46 O2A HO2A O H sing 0.97 N N
47 O2B HO2B O H sing 0.97 N N
48 O3B HO3B O H sing 0.97 N N