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PDBeChem : Atoms of Molecule
Molecule : 2Y6
Atoms of a chemical element, that composes a molecule
Total Number of Atoms: 59
Record |
Atom Name |
Symbol |
PDB Name |
Stereochemistry |
Is Aromatic |
Is Leaving Atom |
Charge |
X-Coordinate |
Y-Coordinate |
Z-Coordinate |
1 |
CL1 |
CL |
CL1 |
N |
N |
N |
0 |
-3.377 |
-2.95 |
0.181 |
2 |
C23 |
C |
C23 |
N |
Y |
N |
0 |
-3.323 |
-1.709 |
1.393 |
3 |
C22 |
C |
C22 |
N |
Y |
N |
0 |
-3.698 |
-1.995 |
2.694 |
4 |
C21 |
C |
C21 |
N |
Y |
N |
0 |
-3.654 |
-1.006 |
3.658 |
5 |
C20 |
C |
C20 |
N |
Y |
N |
0 |
-3.235 |
0.268 |
3.324 |
6 |
C19 |
C |
C19 |
N |
Y |
N |
0 |
-2.859 |
0.554 |
2.025 |
7 |
C18 |
C |
C18 |
N |
Y |
N |
0 |
-2.898 |
-0.435 |
1.06 |
8 |
C17 |
C |
C17 |
R |
N |
N |
0 |
-2.482 |
-0.124 |
-0.355 |
9 |
N2 |
N |
N2 |
N |
N |
N |
0 |
-2.539 |
1.323 |
-0.574 |
10 |
S2 |
S |
S2 |
N |
N |
N |
0 |
-3.891 |
2.007 |
-1.24 |
11 |
O2 |
O |
O2 |
N |
N |
N |
0 |
-3.579 |
3.391 |
-1.322 |
12 |
O3 |
O |
O3 |
N |
N |
N |
0 |
-4.132 |
1.24 |
-2.411 |
13 |
C24 |
C |
C24 |
N |
N |
N |
0 |
-5.195 |
1.721 |
-0.012 |
14 |
C25 |
C |
C25 |
N |
N |
N |
0 |
-6.62 |
2.137 |
-0.384 |
15 |
C26 |
C |
C26 |
N |
N |
N |
0 |
-6.244 |
0.654 |
-0.331 |
16 |
C8 |
C |
C8 |
N |
Y |
N |
0 |
-1.075 |
-0.613 |
-0.584 |
17 |
C7 |
C |
C7 |
N |
Y |
N |
0 |
-0.77 |
-1.74 |
-1.195 |
18 |
S1 |
S |
S1 |
N |
Y |
N |
0 |
0.365 |
0.25 |
-0.078 |
19 |
C5 |
C |
C5 |
N |
Y |
N |
0 |
1.422 |
-0.997 |
-0.729 |
20 |
C6 |
C |
C6 |
N |
Y |
N |
0 |
0.655 |
-2.011 |
-1.304 |
21 |
C3 |
C |
C3 |
N |
Y |
N |
0 |
1.311 |
-3.115 |
-1.89 |
22 |
C2 |
C |
C2 |
N |
Y |
N |
0 |
2.681 |
-3.192 |
-1.893 |
23 |
C1 |
C |
C1 |
N |
Y |
N |
0 |
3.446 |
-2.187 |
-1.322 |
24 |
C4 |
C |
C4 |
N |
Y |
N |
0 |
2.828 |
-1.089 |
-0.743 |
25 |
C9 |
C |
C9 |
N |
Y |
N |
0 |
3.647 |
-0.015 |
-0.133 |
26 |
C13 |
C |
C13 |
N |
Y |
N |
0 |
5.037 |
-0.115 |
-0.144 |
27 |
N1 |
N |
N1 |
N |
Y |
N |
0 |
3.051 |
1.036 |
0.415 |
28 |
C10 |
C |
C10 |
N |
Y |
N |
0 |
3.742 |
2.012 |
0.967 |
29 |
C11 |
C |
C11 |
N |
Y |
N |
0 |
5.124 |
1.975 |
0.995 |
30 |
C12 |
C |
C12 |
N |
Y |
N |
0 |
5.788 |
0.896 |
0.429 |
31 |
C14 |
C |
C14 |
N |
N |
N |
0 |
7.293 |
0.825 |
0.442 |
32 |
C15 |
C |
C15 |
N |
N |
N |
0 |
7.872 |
2.241 |
0.414 |
33 |
C16 |
C |
C16 |
N |
N |
N |
0 |
7.759 |
0.109 |
1.712 |
34 |
O1 |
O |
O1 |
N |
N |
N |
0 |
7.746 |
0.102 |
-0.704 |
35 |
H1 |
H |
H1 |
N |
N |
N |
0 |
-4.027 |
-2.99 |
2.955 |
36 |
H2 |
H |
H2 |
N |
N |
N |
0 |
-3.948 |
-1.229 |
4.674 |
37 |
H3 |
H |
H3 |
N |
N |
N |
0 |
-3.201 |
1.041 |
4.078 |
38 |
H4 |
H |
H4 |
N |
N |
N |
0 |
-2.532 |
1.55 |
1.765 |
39 |
H5 |
H |
H5 |
N |
N |
N |
0 |
-3.158 |
-0.624 |
-1.049 |
40 |
H6 |
H |
H6 |
N |
N |
N |
0 |
-1.784 |
1.88 |
-0.328 |
41 |
H7 |
H |
H7 |
N |
N |
N |
0 |
-4.894 |
1.834 |
1.029 |
42 |
H8 |
H |
H8 |
N |
N |
N |
0 |
-7.256 |
2.523 |
0.412 |
43 |
H9 |
H |
H9 |
N |
N |
N |
0 |
-6.774 |
2.582 |
-1.367 |
44 |
H10 |
H |
H10 |
N |
N |
N |
0 |
-6.151 |
0.124 |
-1.28 |
45 |
H11 |
H |
H11 |
N |
N |
N |
0 |
-6.633 |
0.065 |
0.5 |
46 |
H12 |
H |
H12 |
N |
N |
N |
0 |
-1.521 |
-2.411 |
-1.585 |
47 |
H13 |
H |
H13 |
N |
N |
N |
0 |
0.73 |
-3.907 |
-2.339 |
48 |
H14 |
H |
H14 |
N |
N |
N |
0 |
3.168 |
-4.043 |
-2.345 |
49 |
H15 |
H |
H15 |
N |
N |
N |
0 |
4.523 |
-2.258 |
-1.33 |
50 |
H16 |
H |
H16 |
N |
N |
N |
0 |
5.521 |
-0.969 |
-0.594 |
51 |
H17 |
H |
H17 |
N |
N |
N |
0 |
3.223 |
2.853 |
1.404 |
52 |
H18 |
H |
H18 |
N |
N |
N |
0 |
5.682 |
2.78 |
1.451 |
53 |
H19 |
H |
H19 |
N |
N |
N |
0 |
7.54 |
2.75 |
-0.491 |
54 |
H20 |
H |
H20 |
N |
N |
N |
0 |
7.526 |
2.792 |
1.288 |
55 |
H21 |
H |
H21 |
N |
N |
N |
0 |
8.96 |
2.189 |
0.423 |
56 |
H22 |
H |
H22 |
N |
N |
N |
0 |
8.848 |
0.058 |
1.722 |
57 |
H23 |
H |
H23 |
N |
N |
N |
0 |
7.414 |
0.661 |
2.587 |
58 |
H24 |
H |
H24 |
N |
N |
N |
0 |
7.347 |
-0.899 |
1.733 |
59 |
H25 |
H |
H25 |
N |
N |
N |
0 |
7.487 |
0.499 |
-1.547 |
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