Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 2Y6    

Bonds between two atoms of the molecule

Total Number of Bonds: 63


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C16 C14 C C sing 1.53 N N
2 C15 C14 C C sing 1.53 N N
3 C14 O1 C O sing 1.43 N N
4 C14 C12 C C sing 1.51 N N
5 C11 C12 C C doub 1.39 N Y
6 C11 C10 C C sing 1.38 N Y
7 C12 C13 C C sing 1.38 N Y
8 C10 N1 C N doub 1.32 N Y
9 C13 C9 C C doub 1.39 N Y
10 N1 C9 N C sing 1.33 N Y
11 C9 C4 C C sing 1.48 N N
12 C22 C21 C C doub 1.38 N Y
13 C22 C23 C C sing 1.38 N Y
14 C21 C20 C C sing 1.38 N Y
15 C4 C1 C C doub 1.39 N Y
16 C4 C5 C C sing 1.41 N Y
17 CL1 C23 CL C sing 1.74 N N
18 C23 C18 C C doub 1.38 N Y
19 C1 C2 C C sing 1.39 N Y
20 S1 C5 S C sing 1.76 N Y
21 S1 C8 S C sing 1.75 N Y
22 C20 C19 C C doub 1.38 N Y
23 C5 C6 C C doub 1.4 N Y
24 C18 C19 C C sing 1.38 N Y
25 C18 C17 C C sing 1.51 N N
26 C2 C3 C C doub 1.37 N Y
27 C8 C17 C C sing 1.51 N N
28 C8 C7 C C doub 1.32 N Y
29 C6 C3 C C sing 1.41 N Y
30 C6 C7 C C sing 1.45 N Y
31 C17 N2 C N sing 1.46 N N
32 N2 S2 N S sing 1.66 N N
33 O3 S2 O S doub 1.42 N N
34 C25 C26 C C sing 1.53 N N
35 C25 C24 C C sing 1.53 N N
36 S2 C24 S C sing 1.81 N N
37 S2 O2 S O doub 1.42 N N
38 C26 C24 C C sing 1.53 N N
39 C22 H1 C H sing 1.08 N N
40 C21 H2 C H sing 1.08 N N
41 C20 H3 C H sing 1.08 N N
42 C19 H4 C H sing 1.08 N N
43 C17 H5 C H sing 1.09 N N
44 N2 H6 N H sing 0.97 N N
45 C24 H7 C H sing 1.09 N N
46 C25 H8 C H sing 1.09 N N
47 C25 H9 C H sing 1.09 N N
48 C26 H10 C H sing 1.09 N N
49 C26 H11 C H sing 1.09 N N
50 C7 H12 C H sing 1.08 N N
51 C3 H13 C H sing 1.08 N N
52 C2 H14 C H sing 1.08 N N
53 C1 H15 C H sing 1.08 N N
54 C13 H16 C H sing 1.08 N N
55 C10 H17 C H sing 1.08 N N
56 C11 H18 C H sing 1.08 N N
57 C15 H19 C H sing 1.09 N N
58 C15 H20 C H sing 1.09 N N
59 C15 H21 C H sing 1.09 N N
60 C16 H22 C H sing 1.09 N N
61 C16 H23 C H sing 1.09 N N
62 C16 H24 C H sing 1.09 N N
63 O1 H25 O H sing 0.97 N N