Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 38Z

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 77


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O1 O O1 N N N 0 4.497 0.191 0.382
2 C20 C C20 N N N 0 3.918 0.962 -0.354
3 N5 N N5 N N N 0 4.622 1.767 -1.175
4 C21 C C21 N Y N 0 6.02 1.78 -1.113
5 C26 C C26 N Y N 0 6.686 0.618 -0.851
6 C25 C C25 N Y N 0 8.091 0.624 -0.787
7 C27 C C27 N Y N 0 9.068 -0.346 -0.549
8 C28 C C28 N Y N 0 8.829 -1.775 -0.276
9 C32 C C32 N Y N 0 7.832 -2.18 0.622
10 C31 C C31 N Y N 0 7.644 -3.527 0.848
11 N6 N N6 N Y N 0 8.387 -4.428 0.232
12 C30 C C30 N Y N 0 9.336 -4.09 -0.621
13 C29 C C29 N Y N 0 9.589 -2.767 -0.911
14 N7 N N7 N Y N 0 10.271 0.265 -0.615
15 N8 N N8 N Y N 0 10.098 1.625 -0.894
16 C24 C C24 N Y N 0 8.807 1.888 -1.006
17 C23 C C23 N Y N 0 8.057 3.054 -1.272
18 C22 C C22 N Y N 0 6.704 2.984 -1.327
19 C19 C C19 R N N 0 2.412 1.017 -0.354
20 C C C N N N 0 1.914 2.424 0.071
21 C18 C C18 N N N 0 1.833 0.098 0.742
22 N N N N N N 0 0.684 0.802 1.341
23 C1 C C1 N N N 0 0.515 2.099 0.651
24 C2 C C2 N N N 0 -0.538 -0.008 1.247
25 C3 C C3 N N N 0 -1.625 0.625 2.076
26 O O O N N N 0 -1.404 1.65 2.686
27 N1 N N1 N N N 0 -2.843 0.052 2.14
28 C7 C C7 N N N 0 -3.131 -1.194 1.414
29 C6 C C6 N N N 0 -4.409 -0.994 0.592
30 N2 N N2 N N N 0 -5.486 -0.527 1.475
31 C5 C C5 N N N 0 -5.168 0.783 2.057
32 C4 C C4 N N N 0 -3.919 0.653 2.944
33 C8 C C8 N Y N 0 -6.705 -0.49 0.799
34 C13 C C13 N Y N 0 -6.771 -0.875 -0.536
35 C12 C C12 N Y N 0 -7.974 -0.839 -1.206
36 C11 C C11 N Y N 0 -9.127 -0.416 -0.544
37 C10 C C10 N Y N 0 -9.059 -0.031 0.794
38 C9 C C9 N Y N 0 -7.854 -0.074 1.462
39 C14 C C14 N Y N 0 -10.422 -0.376 -1.263
40 N4 N N4 N Y N 0 -11.508 0.029 -0.618
41 C17 C C17 N Y N 0 -12.679 0.077 -1.231
42 C16 C C16 N Y N 0 -12.762 -0.302 -2.562
43 C15 C C15 N Y N 0 -11.607 -0.72 -3.206
44 N3 N N3 N Y N 0 -10.467 -0.74 -2.538
45 H1 H H1 N N N 0 4.159 2.337 -1.809
46 H2 H H2 N N N 0 6.139 -0.299 -0.693
47 H3 H H3 N N N 0 7.221 -1.449 1.13
48 H4 H H4 N N N 0 6.878 -3.849 1.538
49 H5 H H5 N N N 0 9.919 -4.862 -1.102
50 H6 H H6 N N N 0 10.364 -2.499 -1.614
51 H7 H H7 N N N 0 11.127 -0.174 -0.488
52 H8 H H8 N N N 0 8.558 3.997 -1.436
53 H9 H H9 N N N 0 6.139 3.88 -1.536
54 H10 H H10 N N N 0 2.018 0.749 -1.334
55 H11 H H11 N N N 0 2.563 2.853 0.835
56 H12 H H12 N N N 0 1.837 3.087 -0.79
57 H13 H H13 N N N 0 1.502 -0.842 0.301
58 H14 H H14 N N N 0 2.589 -0.093 1.504
59 H16 H H16 N N N 0 0.21 2.869 1.359
60 H17 H H17 N N N 0 -0.216 2.009 -0.152
61 H18 H H18 N N N 0 -0.859 -0.061 0.206
62 H22 H H22 N N N 0 -4.229 -0.253 -0.186
63 H19 H H19 N N N 0 -0.337 -1.013 1.617
64 H20 H H20 N N N 0 -2.301 -1.429 0.748
65 H21 H H21 N N N 0 -3.276 -2.007 2.125
66 H23 H H23 N N N 0 -4.698 -1.94 0.134
67 H24 H H24 N N N 0 -4.977 1.5 1.259
68 H25 H H25 N N N 0 -6.007 1.126 2.662
69 H26 H H26 N N N 0 -4.138 0.014 3.799
70 H27 H H27 N N N 0 -3.61 1.639 3.29
71 H28 H H28 N N N 0 -5.878 -1.203 -1.048
72 H29 H H29 N N N 0 -8.024 -1.138 -2.243
73 H30 H H30 N N N 0 -9.95 0.297 1.309
74 H31 H H31 N N N 0 -7.802 0.22 2.5
75 H32 H H32 N N N 0 -13.56 0.407 -0.7
76 H33 H H33 N N N 0 -13.706 -0.273 -3.086
77 H34 H H34 N N N 0 -11.638 -1.022 -4.243