Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 3ES

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 89


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 CBM C CBM N N N 0 -4.435 1.373 0.655
2 OAB O OAB N N N 0 -3.966 2.489 0.553
3 OBJ O OBJ N N N 0 -5.682 1.123 0.212
4 CBB C CBB N N N 0 -6.407 2.236 -0.376
5 CBP C CBP N Y N 0 -7.773 1.771 -0.811
6 CAQ C CAQ N Y N 0 -8.839 1.84 0.067
7 CAK C CAK N Y N 0 -10.092 1.414 -0.332
8 CAH C CAH N Y N 0 -10.279 0.919 -1.609
9 CAL C CAL N Y N 0 -9.214 0.849 -2.487
10 CAR C CAR N Y N 0 -7.961 1.276 -2.088
11 OAD O OAD N N N 0 -1.257 -1.524 0.525
12 PBY P PBY N N N 0 -1.14 -0.049 0.527
13 OAG O OAG N N N 0 -1.429 0.515 -0.953
14 CBX C CBX R N N 0 -2.351 0.655 1.693
15 NBI N NBI N N N 0 -3.708 0.384 1.212
16 CBE C CBE N N N 0 -2.162 0.018 3.072
17 CBQ C CBQ N Y N 0 -0.818 0.412 3.627
18 CAS C CAS N Y N 0 -0.558 1.734 3.934
19 CAM C CAM N Y N 0 0.675 2.096 4.444
20 CAI C CAI N Y N 0 1.648 1.135 4.648
21 CAN C CAN N Y N 0 1.387 -0.188 4.342
22 CAT C CAT N Y N 0 0.152 -0.55 3.836
23 CBC C CBC N N N 0 2.605 -0.783 0.307
24 CBS C CBS N Y N 0 2.04 -2.18 0.331
25 CBA C CBA N Y N 0 1.483 -2.844 -0.707
26 OBK O OBK N Y N 0 1.999 -3.009 1.384
27 NBG N NBG N Y N 0 1.488 -4.068 1.103
28 CBU C CBU N Y N 0 1.122 -4.104 -0.154
29 CBT C CBT N Y N 0 0.465 -5.233 -0.86
30 CAU C CAU N Y N 0 0.174 -6.411 -0.175
31 CAO C CAO N Y N 0 -0.437 -7.457 -0.836
32 CAJ C CAJ N Y N 0 -0.758 -7.338 -2.176
33 CAP C CAP N Y N 0 -0.471 -6.171 -2.861
34 CAV C CAV N Y N 0 0.133 -5.116 -2.208
35 CBF C CBF N N N 0 0.544 0.426 1.039
36 CBV C CBV R N N 0 1.513 0.2 -0.123
37 CBN C CBN N N N 0 2.145 1.512 -0.512
38 OAC O OAC N N N 0 1.848 2.527 0.081
39 N N N N N N 0 3.038 1.557 -1.52
40 CA C CA S N N 0 3.652 2.832 -1.899
41 C C C N N N 0 2.747 3.559 -2.861
42 O O O N N N 0 1.698 3.062 -3.196
43 CB C CB N N N 0 5.002 2.57 -2.568
44 CG C CG N Y N 0 5.947 1.954 -1.568
45 CD1 C CD1 N Y N 0 6.008 0.58 -1.431
46 CD2 C CD2 N Y N 0 6.755 2.765 -0.793
47 CE1 C CE1 N Y N 0 6.873 0.013 -0.515
48 CE2 C CE2 N Y N 0 7.618 2.204 0.129
49 CZ C CZ N Y N 0 7.681 0.825 0.268
50 OH O OH N N N 0 8.533 0.27 1.17
51 OXT O OXT N N N 0 3.108 4.757 -3.346
52 HBB1 H HBB1 N N N 0 -5.859 2.611 -1.24
53 HBB2 H HBB2 N N N 0 -6.512 3.031 0.362
54 HAQ H HAQ N N N 0 -8.693 2.232 1.063
55 HAH H HAH N N N 0 -11.258 0.585 -1.92
56 HAL H HAL N N N 0 -9.36 0.461 -3.484
57 HAR H HAR N N N 0 -7.128 1.221 -2.773
58 HAG H HAG N N N 0 -1.37 1.477 -1.026
59 HBX H HBX N N N 0 -2.2 1.732 1.768
60 HBI H HBI N N N 0 -4.082 -0.507 1.293
61 HBE1 H HBE1 N N N 0 -2.949 0.364 3.743
62 HBE2 H HBE2 N N N 0 -2.214 -1.067 2.98
63 HAS H HAS N N N 0 -1.317 2.485 3.775
64 HAM H HAM N N N 0 0.879 3.129 4.683
65 HAI H HAI N N N 0 2.611 1.417 5.045
66 HAN H HAN N N N 0 2.147 -0.939 4.501
67 HAT H HAT N N N 0 -0.053 -1.584 3.601
68 HBC1 H HBC1 N N N 0 3.433 -0.738 -0.4
69 HBC2 H HBC2 N N N 0 2.961 -0.518 1.302
70 HBV H HBV N N N 0 0.97 -0.209 -0.975
71 HBA H HBA N N N 0 1.344 -2.498 -1.721
72 HAU H HAU N N N 0 0.425 -6.504 0.871
73 HAV H HAV N N N 0 0.353 -4.204 -2.742
74 HAO H HAO N N N 0 -0.663 -8.371 -0.306
75 HAJ H HAJ N N N 0 -1.235 -8.16 -2.69
76 HAP H HAP N N N 0 -0.724 -6.084 -3.907
77 HBF1 H HBF1 N N N 0 0.555 1.479 1.322
78 HBF2 H HBF2 N N N 0 0.85 -0.182 1.891
79 H H H N N N 0 3.275 0.745 -1.995
80 HA H HA N N N 0 3.8 3.443 -1.008
81 HB1C H HB1C N N N 0 4.866 1.887 -3.407
82 HB2C H HB2C N N N 0 5.418 3.51 -2.929
83 HD1 H HD1 N N N 0 5.379 -0.052 -2.041
84 HD2 H HD2 N N N 0 6.709 3.838 -0.905
85 HXT H HXT N N N 0 2.495 5.185 -3.96
86 HAK H HAK N N N 0 -10.925 1.468 0.354
87 HE1 H HE1 N N N 0 6.92 -1.06 -0.408
88 HE2 H HE2 N N N 0 8.246 2.838 0.738
89 HH H HH N N N 0 9.411 0.076 0.814