Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 3M6

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 76


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C11 C C1 N N N 0 1.115 2.092 1.025
2 C14 C C2 N Y N 0 3.429 1.582 0.805
3 C15 C C3 N Y N 0 3.708 2.787 0.174
4 C16 C C4 N Y N 0 4.929 2.974 -0.445
5 C25 C C5 N Y N 0 -2.429 -0.541 -0.238
6 C26 C C6 N Y N 0 -1.263 -1.296 -0.304
7 C01 C C7 N N N 0 -7.148 1.323 -1.993
8 C02 C C8 S N N 0 -6.029 1.955 -1.163
9 N03 N N1 N N N 0 -4.81 1.153 -1.295
10 C04 C C9 N N N 0 -3.582 1.746 -1.844
11 C05 C C10 R N N 0 -2.905 2.591 -0.763
12 C06 C C11 N N N 0 -3.96 3.092 0.225
13 C07 C C12 S N N 0 -1.87 1.755 -0.017
14 C08 C C13 N N N 0 -1.269 2.586 1.118
15 N09 N N2 N N N 0 -0.074 1.915 1.635
16 C10 C C14 N N N 0 -0.171 1.052 2.814
17 O12 O O1 N N N 0 1.218 2.891 0.114
18 N13 N N3 N N N 0 2.191 1.388 1.429
19 C17 C C15 N Y N 0 5.871 1.962 -0.438
20 C18 C C16 N Y N 0 5.596 0.761 0.189
21 C19 C C17 N Y N 0 4.378 0.568 0.811
22 C20 C C18 N N N 0 7.202 2.169 -1.115
23 F21 F F1 N N N 0 7.681 0.941 -1.585
24 F22 F F2 N N N 0 7.046 3.051 -2.19
25 F23 F F3 N N N 0 8.113 2.706 -0.199
26 O24 O O2 N N N 0 -2.481 0.583 0.526
27 N27 N N4 N N N 0 -0.127 -0.896 0.41
28 S28 S S1 N N N 0 0.529 -1.9 1.552
29 O29 O O3 N N N 0 1.743 -1.293 1.971
30 O30 O O4 N N N 0 -0.524 -2.231 2.447
31 C31 C C19 N Y N 0 0.977 -3.396 0.736
32 C32 C C20 N Y N 0 2.205 -3.501 0.111
33 C33 C C21 N Y N 0 2.558 -4.674 -0.53
34 C34 C C22 N Y N 0 1.68 -5.744 -0.546
35 F35 F F4 N N N 0 2.023 -6.891 -1.171
36 C36 C C23 N Y N 0 0.449 -5.638 0.081
37 C37 C C24 N Y N 0 0.101 -4.466 0.726
38 C38 C C25 N Y N 0 -1.228 -2.445 -1.079
39 C39 C C26 N Y N 0 -2.352 -2.844 -1.784
40 C40 C C27 N Y N 0 -3.512 -2.104 -1.727
41 C41 C C28 N Y N 0 -3.564 -0.937 -0.954
42 C42 C C29 N N N 0 -4.798 -0.14 -0.916
43 O43 O O5 N N N 0 -5.829 -0.658 -0.534
44 C44 C C30 N N N 0 -6.443 2.003 0.285
45 O45 O O6 N N N 0 -7.265 2.973 0.716
46 O46 O O7 N N N 0 -6.036 1.168 1.058
47 H1 H H1 N N N 0 2.973 3.578 0.168
48 H2 H H2 N N N 0 5.147 3.911 -0.936
49 H3 H H3 N N N 0 -8.055 1.92 -1.894
50 H4 H H4 N N N 0 -6.848 1.288 -3.04
51 H5 H H5 N N N 0 -7.338 0.311 -1.636
52 H6 H H6 N N N 0 -5.838 2.967 -1.52
53 H7 H H7 N N N 0 -2.906 0.953 -2.163
54 H8 H H8 N N N 0 -3.832 2.376 -2.697
55 H9 H H9 N N N 0 -2.413 3.445 -1.228
56 H10 H H10 N N N 0 -3.481 3.704 0.989
57 H11 H H11 N N N 0 -4.701 3.69 -0.307
58 H12 H H12 N N N 0 -4.451 2.241 0.695
59 H13 H H13 N N N 0 -1.078 1.462 -0.706
60 H14 H H14 N N N 0 -0.998 3.573 0.741
61 H15 H H15 N N N 0 -2.001 2.691 1.918
62 H16 H H16 N N N 0 -0.366 0.027 2.499
63 H17 H H17 N N N 0 0.766 1.089 3.369
64 H18 H H18 N N N 0 -0.985 1.398 3.451
65 H19 H H19 N N N 0 2.108 0.747 2.152
66 H20 H H20 N N N 0 6.333 -0.028 0.193
67 H21 H H21 N N N 0 4.163 -0.37 1.301
68 H22 H H22 N N N 0 0.276 -0.031 0.236
69 H23 H H23 N N N 0 2.89 -2.666 0.123
70 H24 H H24 N N N 0 3.517 -4.755 -1.019
71 H25 H H25 N N N 0 -0.235 -6.474 0.073
72 H26 H H26 N N N 0 -0.858 -4.384 1.215
73 H27 H H27 N N N 0 -0.322 -3.031 -1.134
74 H28 H H28 N N N 0 -2.318 -3.742 -2.383
75 H29 H H29 N N N 0 -4.383 -2.425 -2.279
76 H30 H H30 N N N 0 -7.503 2.963 1.653