Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 3M6    

Bonds between two atoms of the molecule

Total Number of Bonds: 79


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C01 C02 C C sing 1.53 N N
2 O46 C44 O C doub 1.21 N N
3 C02 C44 C C sing 1.51 N N
4 C02 N03 C N sing 1.47 N N
5 C44 O45 C O sing 1.34 N N
6 C10 N09 C N sing 1.46 N N
7 C08 N09 C N sing 1.46 N N
8 C08 C07 C C sing 1.53 N N
9 N09 C11 N C sing 1.35 N N
10 N03 C04 N C sing 1.47 N N
11 N03 C42 N C sing 1.35 N N
12 C05 C07 C C sing 1.53 N N
13 C05 C04 C C sing 1.53 N N
14 C05 C06 C C sing 1.53 N N
15 O43 C42 O C doub 1.22 N N
16 C07 O24 C O sing 1.43 N N
17 C42 C41 C C sing 1.47 N N
18 C11 N13 C N sing 1.35 N N
19 C11 O12 C O doub 1.22 N N
20 N13 C14 N C sing 1.4 N N
21 O24 C25 O C sing 1.36 N N
22 C41 C25 C C doub 1.4 N Y
23 C41 C40 C C sing 1.4 N Y
24 C25 C26 C C sing 1.39 N Y
25 C15 C14 C C doub 1.39 N Y
26 C15 C16 C C sing 1.38 N Y
27 C14 C19 C C sing 1.39 N Y
28 C40 C39 C C doub 1.38 N Y
29 C16 C17 C C doub 1.38 N Y
30 C19 C18 C C doub 1.38 N Y
31 C26 N27 C N sing 1.4 N N
32 C26 C38 C C doub 1.39 N Y
33 C36 C37 C C doub 1.38 N Y
34 C36 C34 C C sing 1.39 N Y
35 N27 S28 N S sing 1.66 N N
36 C37 C31 C C sing 1.38 N Y
37 C39 C38 C C sing 1.39 N Y
38 F35 C34 F C sing 1.35 N N
39 C34 C33 C C doub 1.38 N Y
40 C17 C18 C C sing 1.38 N Y
41 C17 C20 C C sing 1.51 N N
42 C31 S28 C S sing 1.76 N N
43 C31 C32 C C doub 1.38 N Y
44 S28 O30 S O doub 1.42 N N
45 S28 O29 S O doub 1.42 N N
46 C33 C32 C C sing 1.38 N Y
47 F21 C20 F C sing 1.4 N N
48 C20 F23 C F sing 1.4 N N
49 C20 F22 C F sing 1.4 N N
50 C15 H1 C H sing 1.08 N N
51 C16 H2 C H sing 1.08 N N
52 C01 H3 C H sing 1.09 N N
53 C01 H4 C H sing 1.09 N N
54 C01 H5 C H sing 1.09 N N
55 C02 H6 C H sing 1.09 N N
56 C04 H7 C H sing 1.09 N N
57 C04 H8 C H sing 1.09 N N
58 C05 H9 C H sing 1.09 N N
59 C06 H10 C H sing 1.09 N N
60 C06 H11 C H sing 1.09 N N
61 C06 H12 C H sing 1.09 N N
62 C07 H13 C H sing 1.09 N N
63 C08 H14 C H sing 1.09 N N
64 C08 H15 C H sing 1.09 N N
65 C10 H16 C H sing 1.09 N N
66 C10 H17 C H sing 1.09 N N
67 C10 H18 C H sing 1.09 N N
68 N13 H19 N H sing 0.97 N N
69 C18 H20 C H sing 1.08 N N
70 C19 H21 C H sing 1.08 N N
71 N27 H22 N H sing 0.97 N N
72 C32 H23 C H sing 1.08 N N
73 C33 H24 C H sing 1.08 N N
74 C36 H25 C H sing 1.08 N N
75 C37 H26 C H sing 1.08 N N
76 C38 H27 C H sing 1.08 N N
77 C39 H28 C H sing 1.08 N N
78 C40 H29 C H sing 1.08 N N
79 O45 H30 O H sing 0.97 N N