Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 3YJ

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 90


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 10.902 -0.201 0.23
2 C4 C C1 N Y N 0 -4.298 -3.605 0.775
3 C5 C C2 N Y N 0 -4.497 -2.242 0.601
4 C6 C C3 N Y N 0 -5.057 -1.78 -0.572
5 C7 C C4 N N N 0 -4.095 -1.328 1.728
6 C8 C C5 R N N 0 -4.009 0.124 1.26
7 C10 C C6 S N N 0 -5.264 -0.316 -0.83
8 C13 C C7 N N N 0 -6.697 1.455 -1.901
9 C15 C C8 N N N 0 -5.469 2.899 1.326
10 C17 C C9 S N N 0 -6.902 3.658 -0.556
11 C20 C C10 N N N 0 -1.515 0.058 1.138
12 C21 C C11 N N N 0 -0.304 0.234 0.219
13 C22 C C12 N N N 0 0.98 -0.009 1.015
14 C24 C C13 N N N 0 3.474 -0.075 0.893
15 C26 C C14 N N N 0 5.969 -0.142 0.77
16 C28 C C15 N N N 0 8.464 -0.208 0.648
17 C1 C C16 N Y N 0 -5.432 -2.681 -1.561
18 C11 C C17 S N N 0 -5.369 1.929 0.144
19 C12 C C18 S N N 0 -6.743 2.142 -0.552
20 C14 C C19 N N N 0 -6.517 -0.054 -1.652
21 C16 C C20 N N N 0 -6.127 4.154 0.69
22 C18 C C21 N N N 0 -7.841 1.512 0.308
23 C19 C C22 N N N 0 -2.799 0.3 0.342
24 C2 C C23 N Y N 0 -5.239 -4.035 -1.387
25 C23 C C24 N N N 0 2.191 0.167 0.097
26 C25 C C25 N N N 0 4.685 0.1 -0.026
27 C27 C C26 N N N 0 7.18 0.034 -0.149
28 C29 C C27 N N N 0 9.656 -0.035 -0.257
29 C3 C C28 N Y N 0 -4.666 -4.502 -0.213
30 C30 C C29 N N N 0 11.096 -0.55 1.64
31 C31 C C30 N N N 0 12.061 -0.039 -0.651
32 C32 C C31 N N N 0 12.521 1.42 -0.625
33 C33 C C32 N N N 0 13.731 1.589 -1.546
34 C9 C C33 R N N 0 -5.29 0.457 0.495
35 O1 O O1 N N N 0 -4.466 -5.834 -0.034
36 O2 O O2 N N N 0 -8.283 4.01 -0.454
37 O3 O O3 N N N 0 9.495 0.253 -1.424
38 H1 H H1 N N N 0 -3.849 -3.968 1.687
39 H2 H H2 N N N 0 -4.831 -1.403 2.528
40 H3 H H3 N N N 0 -3.122 -1.637 2.109
41 H4 H H4 N N N 0 -3.915 0.784 2.124
42 H5 H H5 N N N 0 -4.415 0.044 -1.411
43 H6 H H6 N N N 0 -7.629 1.633 -2.437
44 H7 H H7 N N N 0 -5.857 1.837 -2.481
45 H8 H H8 N N N 0 -6.104 2.487 2.111
46 H9 H H9 N N N 0 -4.481 3.138 1.717
47 H10 H H10 N N N 0 -6.471 4.08 -1.464
48 H11 H H11 N N N 0 -1.522 -0.955 1.54
49 H12 H H12 N N N 0 -1.455 0.774 1.958
50 H13 H H13 N N N 0 -0.363 -0.482 -0.601
51 H14 H H14 N N N 0 -0.297 1.247 -0.183
52 H15 H H15 N N N 0 1.039 0.707 1.835
53 H16 H H16 N N N 0 0.973 -1.022 1.417
54 H17 H H17 N N N 0 3.534 0.64 1.713
55 H18 H H18 N N N 0 3.467 -1.088 1.294
56 H19 H H19 N N N 0 6.028 0.574 1.59
57 H20 H H20 N N N 0 5.962 -1.155 1.172
58 H21 H H21 N N N 0 8.523 0.507 1.468
59 H22 H H22 N N N 0 8.456 -1.222 1.049
60 H23 H H23 N N N 0 -5.879 -2.317 -2.474
61 H24 H H24 N N N 0 -4.544 2.209 -0.511
62 H25 H H25 N N N 0 -6.433 -0.569 -2.609
63 H26 H H26 N N N 0 -7.385 -0.436 -1.115
64 H27 H H27 N N N 0 -6.815 4.616 1.399
65 H28 H H28 N N N 0 -5.36 4.869 0.393
66 H29 H H29 N N N 0 -7.686 0.435 0.364
67 H30 H H30 N N N 0 -7.806 1.937 1.311
68 H31 H H31 N N N 0 -8.814 1.716 -0.139
69 H32 H H32 N N N 0 -2.858 -0.415 -0.478
70 H33 H H33 N N N 0 -2.791 1.313 -0.06
71 H34 H H34 N N N 0 -5.533 -4.729 -2.161
72 H35 H H35 N N N 0 2.131 -0.549 -0.724
73 H36 H H36 N N N 0 2.198 1.18 -0.305
74 H37 H H37 N N N 0 4.626 -0.615 -0.846
75 H38 H H38 N N N 0 4.693 1.114 -0.428
76 H39 H H39 N N N 0 7.12 -0.682 -0.969
77 H40 H H40 N N N 0 7.187 1.047 -0.55
78 H41 H H41 N N N 0 11.106 -1.634 1.748
79 H42 H H42 N N N 0 12.045 -0.141 1.987
80 H43 H H43 N N N 0 10.282 -0.133 2.233
81 H44 H H44 N N N 0 12.871 -0.682 -0.308
82 H45 H H45 N N N 0 11.785 -0.315 -1.669
83 H46 H H46 N N N 0 11.71 2.063 -0.969
84 H47 H H47 N N N 0 12.797 1.696 0.393
85 H48 H H48 N N N 0 13.455 1.314 -2.563
86 H49 H H49 N N N 0 14.059 2.629 -1.527
87 H50 H H50 N N N 0 14.542 0.947 -1.202
88 H51 H H51 N N N 0 -6.158 0.155 1.081
89 H52 H H52 N N N 0 -5.21 -6.292 0.382
90 H53 H H53 N N N 0 -8.447 4.964 -0.451