Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 3YJ    

Bonds between two atoms of the molecule

Total Number of Bonds: 93


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C33 C32 C C sing 1.53 N N
2 C32 C31 C C sing 1.53 N N
3 C31 N1 C N sing 1.46 N N
4 C30 N1 C N sing 1.47 N N
5 N1 C29 N C sing 1.35 N N
6 C29 C28 C C sing 1.51 N N
7 C29 O3 C O doub 1.21 N N
8 C28 C27 C C sing 1.53 N N
9 C27 C26 C C sing 1.53 N N
10 C26 C25 C C sing 1.53 N N
11 C25 C24 C C sing 1.53 N N
12 C24 C23 C C sing 1.53 N N
13 C23 C22 C C sing 1.53 N N
14 C22 C21 C C sing 1.53 N N
15 C21 C20 C C sing 1.53 N N
16 C20 C19 C C sing 1.53 N N
17 C19 C8 C C sing 1.53 N N
18 C8 C7 C C sing 1.53 N N
19 C8 C9 C C sing 1.53 N N
20 O1 C3 O C sing 1.36 N N
21 C4 C3 C C doub 1.38 N Y
22 C4 C5 C C sing 1.39 N Y
23 C3 C2 C C sing 1.39 N Y
24 C7 C5 C C sing 1.51 N N
25 C5 C6 C C doub 1.38 N Y
26 C2 C1 C C doub 1.38 N Y
27 C6 C1 C C sing 1.39 N Y
28 C6 C10 C C sing 1.5 N N
29 C10 C9 C C sing 1.53 N N
30 C10 C14 C C sing 1.52 N N
31 C11 C9 C C sing 1.52 N N
32 C11 C15 C C sing 1.53 N N
33 C11 C12 C C sing 1.55 N N
34 C15 C16 C C sing 1.55 N N
35 C13 C14 C C sing 1.54 N N
36 C13 C12 C C sing 1.51 N N
37 C16 C17 C C sing 1.55 N N
38 C17 C12 C C sing 1.52 N N
39 C17 O2 C O sing 1.43 N N
40 C12 C18 C C sing 1.53 N N
41 C4 H1 C H sing 1.08 N N
42 C7 H2 C H sing 1.09 N N
43 C7 H3 C H sing 1.09 N N
44 C8 H4 C H sing 1.09 N N
45 C10 H5 C H sing 1.09 N N
46 C13 H6 C H sing 1.09 N N
47 C13 H7 C H sing 1.09 N N
48 C15 H8 C H sing 1.09 N N
49 C15 H9 C H sing 1.09 N N
50 C17 H10 C H sing 1.09 N N
51 C20 H11 C H sing 1.09 N N
52 C20 H12 C H sing 1.09 N N
53 C21 H13 C H sing 1.09 N N
54 C21 H14 C H sing 1.09 N N
55 C22 H15 C H sing 1.09 N N
56 C22 H16 C H sing 1.09 N N
57 C24 H17 C H sing 1.09 N N
58 C24 H18 C H sing 1.09 N N
59 C26 H19 C H sing 1.09 N N
60 C26 H20 C H sing 1.09 N N
61 C28 H21 C H sing 1.09 N N
62 C28 H22 C H sing 1.09 N N
63 C1 H23 C H sing 1.08 N N
64 C11 H24 C H sing 1.09 N N
65 C14 H25 C H sing 1.09 N N
66 C14 H26 C H sing 1.09 N N
67 C16 H27 C H sing 1.09 N N
68 C16 H28 C H sing 1.09 N N
69 C18 H29 C H sing 1.09 N N
70 C18 H30 C H sing 1.09 N N
71 C18 H31 C H sing 1.09 N N
72 C19 H32 C H sing 1.09 N N
73 C19 H33 C H sing 1.09 N N
74 C2 H34 C H sing 1.08 N N
75 C23 H35 C H sing 1.09 N N
76 C23 H36 C H sing 1.09 N N
77 C25 H37 C H sing 1.09 N N
78 C25 H38 C H sing 1.09 N N
79 C27 H39 C H sing 1.09 N N
80 C27 H40 C H sing 1.09 N N
81 C30 H41 C H sing 1.09 N N
82 C30 H42 C H sing 1.09 N N
83 C30 H43 C H sing 1.09 N N
84 C31 H44 C H sing 1.09 N N
85 C31 H45 C H sing 1.09 N N
86 C32 H46 C H sing 1.09 N N
87 C32 H47 C H sing 1.09 N N
88 C33 H48 C H sing 1.09 N N
89 C33 H49 C H sing 1.09 N N
90 C33 H50 C H sing 1.09 N N
91 C9 H51 C H sing 1.09 N N
92 O1 H52 O H sing 0.97 N N
93 O2 H53 O H sing 0.97 N N