Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : 4GD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 38


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N01 N N1 N N N 0 -0.361 -0.091 -0.002
2 C02 C C1 N N N 0 0.902 -0.562 -0.004
3 O03 O O1 N N N 0 1.104 -1.763 0.014
4 C04 C C2 N Y N 0 2.032 0.371 -0.03
5 C05 C C3 N Y N 0 1.957 1.775 -0.052
6 N06 N N2 N Y N 0 3.171 2.259 -0.069
7 N07 N N3 N Y N 0 4.094 1.208 -0.06
8 C08 C C4 N Y N 0 3.398 0.032 -0.03
9 N09 N N4 N Y N 0 4.036 -1.139 -0.015
10 C10 C C5 N Y N 0 5.35 -1.191 -0.029
11 C11 C C6 N Y N 0 6.1 -0.01 -0.059
12 C12 C C7 N Y N 0 5.457 1.186 -0.07
13 C13 C C8 N Y N 0 -1.436 -0.979 0.022
14 C14 C C9 N Y N 0 -1.358 -2.338 0.045
15 C15 C C10 N Y N 0 -2.661 -2.842 0.064
16 N16 N N5 N Y N 0 -3.496 -1.834 0.054
17 N17 N N6 N Y N 0 -2.755 -0.645 0.033
18 C18 C C11 N N N 0 -3.041 -4.3 0.092
19 C19 C C12 N Y N 0 -3.279 0.655 0.023
20 C20 C C13 N Y N 0 -4.46 0.924 -0.656
21 C21 C C14 N Y N 0 -4.974 2.205 -0.663
22 C22 C C15 N Y N 0 -4.314 3.221 0.004
23 C23 C C16 N Y N 0 -3.137 2.956 0.681
24 C24 C C17 N Y N 0 -2.621 1.675 0.697
25 H1 H H1 N N N 0 -0.522 0.865 -0.012
26 H2 H H2 N N N 0 1.048 2.358 -0.054
27 H3 H H3 N N N 0 5.852 -2.148 -0.016
28 H4 H H4 N N N 0 7.179 -0.049 -0.07
29 H5 H H5 N N N 0 6.019 2.108 -0.094
30 H6 H H6 N N N 0 -0.45 -2.922 0.047
31 H7 H H7 N N N 0 -3.125 -4.634 1.126
32 H8 H H8 N N N 0 -3.998 -4.435 -0.412
33 H9 H H9 N N N 0 -2.276 -4.884 -0.419
34 H10 H H10 N N N 0 -4.976 0.131 -1.178
35 H11 H H11 N N N 0 -5.892 2.415 -1.192
36 H12 H H12 N N N 0 -4.718 4.222 -0.003
37 H13 H H13 N N N 0 -2.626 3.75 1.205
38 H14 H H14 N N N 0 -1.702 1.469 1.226