Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : 5LK

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 56


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N Y N 0 2.075 1.664 -0.655
2 N2 N N2 N Y N 0 1.535 1.629 -1.934
3 C3 C C3 N Y N 0 0.438 0.912 -1.914
4 C5 C C5 N Y N 0 0.225 0.451 -0.599
5 C6 C C6 N Y N 0 1.259 0.935 0.173
6 N7 N N7 N N N 0 1.523 0.788 1.501
7 C8 C C8 N N N 0 2.714 1.063 1.929
8 C10 C C10 R N N 0 3.824 1.503 1.018
9 C11 C C11 R N N 0 3.29 2.32 -0.163
10 N12 N N12 N N N 0 2.972 3.684 0.281
11 C15 C C15 N Y N 0 4.54 0.287 0.491
12 C16 C C16 N Y N 0 5.889 0.115 0.745
13 C18 C C18 N Y N 0 6.547 -0.999 0.263
14 C20 C C20 N Y N 0 5.855 -1.947 -0.477
15 C21 C C21 N Y N 0 4.503 -1.772 -0.731
16 C23 C C23 N Y N 0 3.847 -0.659 -0.242
17 O25 O O25 N N N 0 6.501 -3.044 -0.953
18 C27 C C27 N Y N 0 -0.9 -0.394 -0.134
19 C28 C C28 N Y N 0 -2.212 -0.049 -0.453
20 C30 C C30 N Y N 0 -3.26 -0.844 -0.015
21 C31 C C31 N Y N 0 -3.0 -1.981 0.741
22 C33 C C33 N Y N 0 -1.699 -2.323 1.058
23 C35 C C35 N Y N 0 -0.649 -1.54 0.62
24 N37 N N37 N N N 0 -4.577 -0.502 -0.332
25 C38 C C38 N N N 0 -5.524 -1.475 0.229
26 C41 C C41 N N N 0 -6.945 -1.11 -0.206
27 N44 N N44 N N N 0 -7.26 0.251 0.251
28 C45 C C45 N N N 0 -6.313 1.224 -0.31
29 C48 C C48 N N N 0 -4.892 0.859 0.125
30 C51 C C51 N N N 0 -8.644 0.61 -0.083
31 H3 H H3 N N N 0 -0.197 0.708 -2.764
32 H8 H H8 N N N 0 2.918 0.973 2.985
33 H10 H H10 N N N 0 4.528 2.114 1.583
34 HN12 H HN12 N N N 0 2.596 4.233 -0.477
35 H16 H H16 N N N 0 6.427 0.853 1.321
36 H18 H H18 N N N 0 7.601 -1.133 0.462
37 H21 H H21 N N N 0 3.961 -2.509 -1.307
38 H23 H H23 N N N 0 2.793 -0.525 -0.435
39 HO25 H HO25 N N N 0 6.493 -3.798 -0.348
40 H28 H H28 N N N 0 -2.411 0.836 -1.04
41 H31 H H31 N N N 0 -3.817 -2.6 1.082
42 H33 H H33 N N N 0 -1.502 -3.207 1.646
43 H35 H H35 N N N 0 0.367 -1.813 0.865
44 H38 H H38 N N N 0 -5.277 -2.473 -0.133
45 H38A H H38A N N N 0 -5.461 -1.458 1.317
46 H41 H H41 N N N 0 -7.015 -1.154 -1.293
47 H41A H H41A N N N 0 -7.652 -1.814 0.233
48 H45 H H45 N N N 0 -6.375 1.207 -1.398
49 H45A H H45A N N N 0 -6.559 2.222 0.052
50 H48 H H48 N N N 0 -4.822 0.903 1.212
51 H48A H H48A N N N 0 -4.185 1.563 -0.314
52 H51 H H51 N N N 0 -9.328 -0.088 0.401
53 H51A H H51A N N N 0 -8.851 1.622 0.267
54 H51B H H51B N N N 0 -8.782 0.564 -1.163
55 H25 H H25 N N N 0 4.037 2.354 -0.955
56 H26 H H26 N N N 0 2.339 3.67 1.066