Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 5NY

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 64


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 CL CL CL1 N N N 0 3.813 -1.677 -1.845
2 C25 C C1 N Y N 0 3.542 -0.452 -0.646
3 C24 C C2 N Y N 0 4.529 0.467 -0.361
4 C23 C C3 N Y N 0 4.312 1.448 0.599
5 N2 N N1 N Y N 0 5.316 2.379 0.885
6 C27 C C4 N Y N 0 5.262 3.396 1.792
7 N4 N N2 N Y N 0 6.406 4.021 1.74
8 N3 N N3 N Y N 0 7.169 3.467 0.867
9 C26 C C5 N Y N 0 6.554 2.455 0.318
10 C22 C C6 N Y N 0 3.099 1.507 1.276
11 C21 C C7 N Y N 0 2.107 0.593 0.998
12 C20 C C8 N Y N 0 2.318 -0.392 0.03
13 C19 C C9 N N N 0 1.258 -1.374 -0.271
14 O O O1 N N N 0 1.444 -2.23 -1.114
15 N1 N N4 N N N 0 0.084 -1.321 0.389
16 C10 C C10 S N N 0 -1.009 -2.222 0.013
17 C9 C C11 N N N 0 -2.239 -1.917 0.872
18 N N N5 N Y N 0 -2.772 -0.599 0.495
19 C4 C C12 N Y N 0 -3.631 0.17 1.228
20 C3 C C13 N Y N 0 -4.232 -0.032 2.469
21 C2 C C14 N Y N 0 -5.068 0.97 2.931
22 C13 C C15 N Y N 0 -0.581 -3.649 0.236
23 C18 C C16 N Y N 0 0.415 -3.938 1.15
24 C17 C C17 N Y N 0 0.807 -5.247 1.355
25 C16 C C18 N Y N 0 0.203 -6.269 0.646
26 C15 C C19 N Y N 0 -0.793 -5.98 -0.268
27 C14 C C20 N Y N 0 -1.19 -4.671 -0.468
28 C11 C C21 N N N 0 -1.353 -2.018 -1.465
29 C12 C C22 N N N 0 -1.537 -0.519 -1.734
30 C8 C C23 N Y N 0 -2.462 0.042 -0.678
31 C7 C C24 N Y N 0 -3.106 1.238 -0.739
32 C5 C C25 N Y N 0 -3.881 1.354 0.494
33 C6 C C26 N Y N 0 -4.728 2.35 0.982
34 C1 C C27 N Y N 0 -5.307 2.126 2.207
35 C C C28 N N N 0 -6.231 3.169 2.781
36 N6 N N8 N Y N 0 -2.499 3.154 -3.684
37 C28 C C29 N Y N 0 -3.035 2.226 -1.834
38 N8 N N6 N Y N 0 -3.678 3.426 -1.888
39 N7 N N7 N Y N 0 -3.295 3.993 -3.116
40 N5 N N9 N Y N 0 -2.332 2.118 -2.944
41 H20 H H1 N N N 0 5.472 0.425 -0.886
42 H22 H H2 N N N 0 4.427 3.639 2.433
43 H21 H H3 N N N 0 6.951 1.8 -0.444
44 H19 H H4 N N N 0 2.934 2.27 2.022
45 H18 H H5 N N N 0 1.166 0.639 1.525
46 H17 H H6 N N N 0 -0.038 -0.686 1.112
47 H7 H H7 N N N 0 -2.999 -2.68 0.703
48 H6 H H8 N N N 0 -1.956 -1.909 1.924
49 H4 H H9 N N N 0 -4.054 -0.929 3.044
50 H3 H H10 N N N 0 -5.551 0.846 3.89
51 H16 H H11 N N N 0 0.887 -3.14 1.704
52 H15 H H12 N N N 0 1.586 -5.473 2.068
53 H14 H H13 N N N 0 0.51 -7.292 0.805
54 H13 H H14 N N N 0 -1.269 -6.779 -0.818
55 H12 H H15 N N N 0 -1.969 -4.446 -1.182
56 H9 H H16 N N N 0 -0.542 -2.402 -2.085
57 H8 H H17 N N N 0 -2.276 -2.547 -1.701
58 H11 H H18 N N N 0 -0.572 -0.015 -1.683
59 H10 H H19 N N N 0 -1.976 -0.375 -2.721
60 H5 H H20 N N N 0 -4.919 3.254 0.423
61 H2 H H21 N N N 0 -5.656 3.874 3.38
62 H1 H H22 N N N 0 -6.727 3.701 1.969
63 H H H23 N N N 0 -6.98 2.685 3.408
64 H23 H H24 N N N 0 -4.273 3.807 -1.222