Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : 5NY    

Bonds between two atoms of the molecule

Total Number of Bonds: 70


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C15 C14 C C doub 1.38 N Y
2 C15 C16 C C sing 1.38 N Y
3 C14 C13 C C sing 1.38 N Y
4 C16 C17 C C doub 1.38 N Y
5 C11 C12 C C sing 1.53 N N
6 C11 C10 C C sing 1.53 N N
7 O C19 O C doub 1.22 N N
8 C12 C8 C C sing 1.51 N N
9 C13 C10 C C sing 1.51 N N
10 C13 C18 C C doub 1.38 N Y
11 C17 C18 C C sing 1.38 N Y
12 N8 N7 N N sing 1.41 N Y
13 N8 C28 N C sing 1.36 N Y
14 C10 N1 C N sing 1.47 N N
15 C10 C9 C C sing 1.53 N N
16 N7 N6 N N doub 1.29 N Y
17 C19 N1 C N sing 1.35 N N
18 C19 C20 C C sing 1.48 N N
19 C8 N C N sing 1.37 N Y
20 C8 C7 C C doub 1.36 N Y
21 C9 N C N sing 1.47 N N
22 C28 C7 C C sing 1.48 N N
23 C28 N5 C N doub 1.32 N Y
24 N6 N5 N N sing 1.28 N Y
25 N C4 N C sing 1.37 N Y
26 C7 C5 C C sing 1.46 N Y
27 C20 C21 C C doub 1.4 N Y
28 C20 C25 C C sing 1.4 N Y
29 C21 C22 C C sing 1.38 N Y
30 CL C25 CL C sing 1.74 N N
31 C25 C24 C C doub 1.38 N Y
32 C22 C23 C C doub 1.39 N Y
33 C4 C5 C C doub 1.42 N Y
34 C4 C3 C C sing 1.39 N Y
35 C5 C6 C C sing 1.4 N Y
36 C24 C23 C C sing 1.39 N Y
37 C23 N2 C N sing 1.4 N N
38 C3 C2 C C doub 1.38 N Y
39 C26 N2 C N sing 1.36 N Y
40 C26 N3 C N doub 1.31 N Y
41 C6 C1 C C doub 1.37 N Y
42 N2 C27 N C sing 1.36 N Y
43 N3 N4 N N sing 1.28 N Y
44 C2 C1 C C sing 1.38 N Y
45 C1 C C C sing 1.51 N N
46 C27 N4 C N doub 1.3 N Y
47 C24 H20 C H sing 1.08 N N
48 C27 H22 C H sing 1.08 N N
49 C26 H21 C H sing 1.08 N N
50 C22 H19 C H sing 1.08 N N
51 C21 H18 C H sing 1.08 N N
52 N1 H17 N H sing 0.97 N N
53 C9 H7 C H sing 1.09 N N
54 C9 H6 C H sing 1.09 N N
55 C3 H4 C H sing 1.08 N N
56 C2 H3 C H sing 1.08 N N
57 C18 H16 C H sing 1.08 N N
58 C17 H15 C H sing 1.08 N N
59 C16 H14 C H sing 1.08 N N
60 C15 H13 C H sing 1.08 N N
61 C14 H12 C H sing 1.08 N N
62 C11 H9 C H sing 1.09 N N
63 C11 H8 C H sing 1.09 N N
64 C12 H11 C H sing 1.09 N N
65 C12 H10 C H sing 1.09 N N
66 C6 H5 C H sing 1.08 N N
67 C H2 C H sing 1.09 N N
68 C H1 C H sing 1.09 N N
69 C H C H sing 1.09 N N
70 N8 H23 N H sing 0.97 N N