Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 5O3

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 48


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 -7.31 -0.991 -0.801
2 C2 C C2 N Y N 0 -7.555 -0.53 0.48
3 C3 C C3 N Y N 0 -6.549 0.087 1.202
4 C4 C C4 N Y N 0 -5.293 0.246 0.647
5 C5 C C5 N Y N 0 -5.038 -0.214 -0.636
6 C6 C C6 N N N 0 -2.694 0.139 -0.404
7 C7 C C7 N Y N 0 -0.356 0.487 -0.129
8 C8 C C8 N Y N 0 -0.253 -0.313 1.002
9 C9 C C9 N Y N 0 0.866 -0.228 1.806
10 C10 C C10 N Y N 0 1.883 0.654 1.488
11 C11 C C11 N Y N 0 1.783 1.452 0.363
12 C12 C C12 N Y N 0 4.742 0.651 -0.759
13 C13 C C13 N Y N 0 5.405 0.589 0.464
14 C14 C C14 N Y N 0 6.065 -0.555 0.83
15 C15 C C15 N Y N 0 6.072 -1.661 -0.025
16 C16 C C16 N N N 0 6.78 -2.893 0.366
17 C17 C C17 N Y N 0 5.405 -1.596 -1.253
18 C18 C C18 N Y N 0 4.747 -0.448 -1.614
19 C19 C C19 N Y N 0 0.669 1.367 -0.449
20 CL CL CL1 N N N 0 -9.13 -0.726 1.184
21 C C C20 N Y N 0 -6.051 -0.84 -1.362
22 N3 N N1 N N N 0 4.07 1.811 -1.126
23 N N N2 N N N 0 -5.799 -1.306 -2.658
24 O O O1 N N N 0 -2.815 0.074 0.804
25 N1 N N3 N N N 0 -3.764 -0.053 -1.2
26 S S S1 N N N 0 3.081 2.574 -0.038
27 O1 O O2 N N N 0 2.476 3.655 -0.734
28 O2 O O3 N N N 0 3.845 2.744 1.148
29 N2 N N4 N N N 0 -1.489 0.402 -0.947
30 O4 O O4 N N N 0 7.359 -2.949 1.433
31 O3 O O5 N N N 0 6.786 -3.958 -0.46
32 H1 H H1 N N N 0 -8.097 -1.472 -1.362
33 H2 H H2 N N N 0 -6.746 0.445 2.201
34 H3 H H3 N N N 0 -4.511 0.731 1.212
35 H4 H H4 N N N 0 -1.047 -1.002 1.251
36 H5 H H5 N N N 0 0.947 -0.85 2.685
37 H6 H H6 N N N 0 2.755 0.722 2.121
38 H7 H H7 N N N 0 5.399 1.444 1.124
39 H8 H H8 N N N 0 6.579 -0.602 1.779
40 H9 H H9 N N N 0 5.409 -2.448 -1.916
41 H10 H H10 N N N 0 4.232 -0.397 -2.562
42 H11 H H11 N N N 0 0.591 1.99 -1.327
43 H12 H H12 N N N 0 4.179 2.174 -2.019
44 H13 H H13 N N N 0 -4.92 -1.193 -3.051
45 H14 H H14 N N N 0 -6.505 -1.741 -3.162
46 H15 H H15 N N N 0 -3.654 -0.079 -2.163
47 H16 H H16 N N N 0 -1.406 0.533 -1.904
48 H17 H H17 N N N 0 7.263 -4.744 -0.16