Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 5O3    

Bonds between two atoms of the molecule

Total Number of Bonds: 50


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C13 C14 C C doub 1.37 N Y
2 C13 C12 C C sing 1.39 N Y
3 C14 C15 C C sing 1.4 N Y
4 N3 C12 N C sing 1.39 N N
5 N3 S N S sing 1.66 N N
6 C12 C18 C C doub 1.39 N Y
7 O4 C16 O C doub 1.22 N N
8 O2 S O S doub 1.42 N N
9 C15 C16 C C sing 1.47 N N
10 C15 C17 C C doub 1.4 N Y
11 S O1 S O doub 1.42 N N
12 S C11 S C sing 1.76 N N
13 C16 O3 C O sing 1.35 N N
14 C18 C17 C C sing 1.37 N Y
15 C10 C11 C C doub 1.38 N Y
16 C10 C9 C C sing 1.38 N Y
17 C11 C19 C C sing 1.38 N Y
18 C9 C8 C C doub 1.38 N Y
19 C19 C7 C C doub 1.39 N Y
20 C8 C7 C C sing 1.39 N Y
21 C7 N2 C N sing 1.4 N N
22 O C6 O C doub 1.22 N N
23 N2 C6 N C sing 1.35 N N
24 C6 N1 C N sing 1.35 N N
25 N1 C5 N C sing 1.4 N N
26 C4 C5 C C doub 1.39 N Y
27 C4 C3 C C sing 1.38 N Y
28 C5 C C C sing 1.39 N Y
29 C3 C2 C C doub 1.38 N Y
30 C N C N sing 1.4 N N
31 C C1 C C doub 1.39 N Y
32 C2 C1 C C sing 1.38 N Y
33 C2 CL C CL sing 1.74 N N
34 C1 H1 C H sing 1.08 N N
35 C3 H2 C H sing 1.08 N N
36 C4 H3 C H sing 1.08 N N
37 C8 H4 C H sing 1.08 N N
38 C9 H5 C H sing 1.08 N N
39 C10 H6 C H sing 1.08 N N
40 C13 H7 C H sing 1.08 N N
41 C14 H8 C H sing 1.08 N N
42 C17 H9 C H sing 1.08 N N
43 C18 H10 C H sing 1.08 N N
44 C19 H11 C H sing 1.08 N N
45 N3 H12 N H sing 0.97 N N
46 N H13 N H sing 0.97 N N
47 N H14 N H sing 0.97 N N
48 N1 H15 N H sing 0.97 N N
49 N2 H16 N H sing 0.97 N N
50 O3 H17 O H sing 0.97 N N