Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 5VP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 39


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N Y N 0 1.871 1.812 0.058
2 N3 N N2 N N N 0 -0.179 0.661 0.043
3 C4 C C1 N Y N 0 1.93 -0.549 -0.012
4 C5 C C2 N Y N 0 2.426 -2.84 -0.083
5 C6 C C3 N Y N 0 1.457 -1.927 -0.048
6 C7 C C4 N Y N 0 0.018 -2.283 -0.044
7 C8 C C5 N Y N 0 -0.824 -1.805 -1.047
8 C10 C C6 N Y N 0 -2.669 -2.948 -0.036
9 C13 C C7 N N N 0 -0.919 1.922 -0.043
10 C15 C C8 N Y N 0 -3.066 1.598 1.201
11 C17 C C9 N Y N 0 -5.116 1.123 0.052
12 C1 C C10 N Y N 0 1.204 0.668 0.031
13 C11 C C11 N Y N 0 -1.837 -3.431 0.958
14 C12 C C12 N Y N 0 -0.497 -3.102 0.96
15 C14 C C13 N Y N 0 -2.399 1.64 -0.009
16 C16 C C14 N Y N 0 -4.423 1.34 1.234
17 C18 C C15 N Y N 0 -4.444 1.165 -1.161
18 C19 C C16 N Y N 0 -3.087 1.424 -1.189
19 C2 C C17 N Y N 0 3.193 1.834 0.046
20 C3 C C18 N Y N 0 3.322 -0.472 -0.023
21 C9 C C19 N Y N 0 -2.162 -2.14 -1.038
22 N2 N N3 N Y N 0 3.908 0.733 0.007
23 O1 O O1 N N N 0 -6.45 0.868 0.082
24 S1 S S1 N Y N 0 4.01 -2.089 -0.078
25 CL1 CL CL1 N N N 0 4.009 3.365 0.083
26 H1 H H1 N N N 0 -0.659 -0.179 0.108
27 H2 H H2 N N N 0 2.258 -3.907 -0.113
28 H4 H H4 N N N 0 -0.429 -1.173 -1.829
29 H5 H H5 N N N 0 -3.718 -3.208 -0.034
30 H6 H H6 N N N 0 -0.651 2.559 0.801
31 H7 H H7 N N N 0 -0.666 2.429 -0.974
32 H8 H H8 N N N 0 -2.526 1.763 2.121
33 H9 H H9 N N N 0 -2.239 -4.062 1.738
34 H10 H H10 N N N 0 0.151 -3.48 1.737
35 H11 H H11 N N N 0 -4.944 1.307 2.18
36 H12 H H12 N N N 0 -4.981 0.997 -2.083
37 H13 H H13 N N N 0 -2.563 1.458 -2.133
38 H14 H H14 N N N 0 -2.816 -1.77 -1.814
39 H15 H H15 N N N 0 -7.003 1.66 0.029