Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 5VP    

Bonds between two atoms of the molecule

Total Number of Bonds: 42


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N1 C1 N C doub 1.32 N Y
2 N1 C2 N C sing 1.32 N Y
3 N3 C13 N C sing 1.46 N N
4 N3 C1 N C sing 1.38 N N
5 C4 C6 C C sing 1.46 N Y
6 C4 C1 C C sing 1.42 N Y
7 C4 C3 C C doub 1.39 N Y
8 C5 C6 C C doub 1.33 N Y
9 C5 S1 C S sing 1.75 N Y
10 C6 C7 C C sing 1.48 N N
11 C7 C8 C C doub 1.39 N Y
12 C7 C12 C C sing 1.39 N Y
13 C8 C9 C C sing 1.38 N Y
14 C10 C11 C C sing 1.38 N Y
15 C10 C9 C C doub 1.38 N Y
16 C13 C14 C C sing 1.51 N N
17 C15 C14 C C doub 1.38 N Y
18 C15 C16 C C sing 1.38 N Y
19 C17 C16 C C doub 1.39 N Y
20 C17 C18 C C sing 1.39 N Y
21 C17 O1 C O sing 1.36 N N
22 C11 C12 C C doub 1.38 N Y
23 C14 C19 C C sing 1.38 N Y
24 C18 C19 C C doub 1.38 N Y
25 C2 N2 C N doub 1.31 N Y
26 C2 CL1 C CL sing 1.74 N N
27 C3 N2 C N sing 1.34 N Y
28 C3 S1 C S sing 1.76 N Y
29 N3 H1 N H sing 0.97 N N
30 C5 H2 C H sing 1.08 N N
31 C8 H4 C H sing 1.08 N N
32 C10 H5 C H sing 1.08 N N
33 C13 H6 C H sing 1.09 N N
34 C13 H7 C H sing 1.09 N N
35 C15 H8 C H sing 1.08 N N
36 C11 H9 C H sing 1.08 N N
37 C12 H10 C H sing 1.08 N N
38 C16 H11 C H sing 1.08 N N
39 C18 H12 C H sing 1.08 N N
40 C19 H13 C H sing 1.08 N N
41 C9 H14 C H sing 1.08 N N
42 O1 H15 O H sing 0.97 N N