Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 5YE

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 42


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C4 C C1 N N N 0 1.007 2.257 0.577
2 C14 C C2 N Y N 0 -4.604 -1.118 -1.047
3 C5 C C3 N N N 0 2.274 1.767 0.255
4 C6 C C4 N N N 0 3.667 -0.203 -0.194
5 C11 C C5 N N N 0 5.083 0.3 -0.487
6 C7 C C6 N N N 0 3.65 -1.524 -0.279
7 C8 C C7 N N N 0 1.392 -0.389 0.311
8 C9 C C8 N N N 0 5.012 -2.085 -0.623
9 C10 C C9 N N N 0 5.993 -0.933 -0.319
10 C12 C C10 N Y N 0 -3.036 0.363 0.001
11 C13 C C11 N Y N 0 -3.914 0.078 -1.036
12 N1 N N1 N N N 0 2.462 0.421 0.122
13 N2 N N2 N N N 0 0.19 0.071 0.61
14 C3 C C12 N N N 0 -0.034 1.371 0.755
15 F F F1 N N N 0 -5.101 -3.201 -0.034
16 C15 C C13 N Y N 0 -4.421 -2.033 -0.024
17 C16 C C14 N Y N 0 -3.542 -1.754 1.009
18 C17 C C15 N Y N 0 -2.846 -0.561 1.02
19 N N N3 N N N 0 -2.336 1.574 0.014
20 C1 C C16 N N N 0 -2.529 2.543 -1.068
21 C C C17 N N N 0 -3.671 3.493 -0.703
22 C2 C C18 N N N 0 -1.41 1.873 1.109
23 O O O1 N N N 0 3.208 2.536 0.094
24 S S S1 N N N 0 1.989 -2.037 0.064
25 H1 H H1 N N N 0 0.845 3.319 0.69
26 H2 H H2 N N N 0 -5.29 -1.338 -1.852
27 H3 H H3 N N N 0 5.146 0.68 -1.506
28 H4 H H4 N N N 0 5.362 1.077 0.224
29 H5 H H5 N N N 0 5.235 -2.95 0.002
30 H6 H H6 N N N 0 5.056 -2.356 -1.677
31 H7 H H7 N N N 0 6.811 -0.916 -1.039
32 H8 H H8 N N N 0 6.373 -1.002 0.701
33 H9 H H9 N N N 0 -4.057 0.792 -1.835
34 H11 H H11 N N N 0 -3.401 -2.469 1.806
35 H12 H H12 N N N 0 -2.163 -0.342 1.828
36 H13 H H13 N N N 0 -1.612 3.114 -1.211
37 H14 H H14 N N N 0 -2.776 2.014 -1.989
38 H15 H H15 N N N 0 -4.588 2.922 -0.56
39 H16 H H16 N N N 0 -3.424 4.021 0.218
40 H17 H H17 N N N 0 -3.814 4.214 -1.508
41 H18 H H18 N N N 0 -1.753 1.381 2.02
42 H19 H H19 N N N 0 -1.374 2.95 1.27