Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : 6CF

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 46


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 5.396 0.55 -0.612
2 P1 P P1 N N N 0 -1.016 -1.066 0.623
3 C2 C C2 N N N 0 5.469 0.882 0.69
4 O2 O O2 N N N 0 4.855 0.223 1.513
5 P2 P P2 N N N 0 -3.799 -0.033 0.405
6 N3 N N3 N N N 0 6.2 1.919 1.095
7 P3 P P3 N N N 0 -6.376 1.208 -0.375
8 C4 C C4 N N N 0 6.877 2.652 0.222
9 N4 N N4 N N N 0 7.63 3.721 0.652
10 C5 C C5 N N N 0 6.822 2.331 -1.15
11 C6 C C6 N N N 0 6.074 1.274 -1.546
12 C1' C C1' R N N 0 4.588 -0.6 -1.027
13 F1A F F1A N N N 0 -1.691 1.129 -0.683
14 O1A O O1A N N N 0 -0.835 -0.285 2.018
15 O1B O O1B N N N 0 -3.633 0.686 1.688
16 O1G O O1G N N N 0 -6.731 2.326 -1.478
17 C2' C C2' N N N 0 5.129 -1.897 -0.384
18 F2A F F2A N N N 0 -2.345 -0.835 -1.649
19 O2A O O2A N N N 0 -1.541 -2.426 0.883
20 O2B O O2B N N N 0 -4.37 -1.512 0.689
21 O2G O O2G N N N 0 -7.321 -0.077 -0.589
22 C3' C C3' S N N 0 3.858 -2.713 -0.06
23 O3' O O3' N N N 0 3.863 -3.951 -0.774
24 C3A C C3A N N N 0 -2.187 -0.156 -0.437
25 O3B O O3B N N N 0 -4.834 0.771 -0.53
26 O3G O O3G N N N 0 -6.597 1.763 0.979
27 C4' C C4' R N N 0 2.7 -1.813 -0.546
28 O4' O O4' N N N 0 3.24 -0.474 -0.525
29 C5' C C5' N N N 0 1.507 -1.921 0.406
30 O5' O O5' N N N 0 0.408 -1.174 -0.121
31 HN4 H HN4 N N N 0 7.666 3.939 1.597
32 HN4A H HN4A N N N 0 8.124 4.255 0.011
33 H5 H H5 N N N 0 7.367 2.919 -1.873
34 H6 H H6 N N N 0 6.016 1.007 -2.591
35 H1' H H1' N N N 0 4.583 -0.687 -2.113
36 HO1A H HO1A N N N 0 -0.493 0.615 1.923
37 HO1G H HO1G N N N 0 -7.646 2.636 -1.443
38 H2' H H2' N N N 0 5.761 -2.437 -1.088
39 H2'A H H2'A N N N 0 5.68 -1.67 0.529
40 HO2B H HO2B N N N 0 -4.505 -2.041 -0.109
41 HO2G H HO2G N N N 0 -7.229 -0.493 -1.457
42 H3' H H3' N N N 0 3.78 -2.89 1.013
43 HO3' H HO3' N N N 0 4.604 -4.53 -0.551
44 H4' H H4' N N N 0 2.403 -2.089 -1.557
45 H5' H H5' N N N 0 1.218 -2.967 0.511
46 H5'A H H5'A N N N 0 1.783 -1.521 1.382