Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 7MC

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 67


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C C C N N N 0 -2.376 0.771 0.236
2 N N N N N N 0 -1.922 3.076 -0.374
3 O O O N N N 0 -1.965 0.501 -0.872
4 P P P R N N 0 -2.736 -1.774 0.564
5 N1 N N1 N Y N 0 7.305 1.046 -1.267
6 C2 C C2 N Y N 0 7.167 -0.264 -1.165
7 N3 N N3 N Y N 0 6.022 -0.831 -0.849
8 C4 C C4 N Y N 0 4.942 -0.092 -0.616
9 C5 C C5 N Y N 0 5.037 1.307 -0.711
10 C6 C C6 N Y N 0 6.281 1.865 -1.052
11 N6 N N6 N N N 0 6.435 3.236 -1.162
12 N7 N N7 N Y N 0 3.812 1.811 -0.43
13 C8 C C8 N Y N 0 2.99 0.834 -0.174
14 N8 N N8 N N N 0 -2.79 -0.212 1.06
15 N9 N N9 N Y N 0 3.64 -0.36 -0.275
16 CA C CA S N N 0 -2.42 2.206 0.695
17 CB C CB N N N 0 -3.862 2.59 1.034
18 CG C CG N N N 0 -3.888 3.978 1.619
19 C1' C C1' R N N 0 3.055 -1.686 -0.061
20 O1P O O1P N N N 0 -3.24 -2.653 1.643
21 C2' C C2' R N N 0 3.3 -2.162 1.393
22 O2' O O2' N N N 0 4.568 -2.81 1.511
23 C3' C C3' S N N 0 2.142 -3.168 1.605
24 O3' O O3' N N N 0 2.598 -4.506 1.394
25 O31 O O31 N N N 0 -3.654 -1.953 -0.747
26 C32 C C32 N N N 0 -5.081 -1.879 -0.713
27 C33 C C33 N N N 0 -5.636 -2.092 -2.123
28 C34 C C34 N N N 0 -7.164 -2.013 -2.087
29 N35 N N35 N N N 0 -7.696 -2.217 -3.441
30 C36 C C36 N N N 0 -0.603 3.338 -0.47
31 C37 C C37 N N N 0 -0.104 4.321 -1.497
32 O38 O O38 N N N 0 0.181 2.782 0.27
33 C4' C C4' R N N 0 1.101 -2.776 0.538
34 O4' O O4' N N N 0 1.615 -1.628 -0.159
35 C5' C C5' N N N 0 -0.226 -2.423 1.212
36 O5' O O5' N N N 0 -1.216 -2.174 0.212
37 OD1 O OD1 N N N 0 -5.061 4.572 1.888
38 OD2 O OD2 N N N 0 -2.852 4.558 1.847
39 HN H HN N N N 0 -2.541 3.463 -1.012
40 H2 H H2 N N N 0 8.025 -0.893 -1.348
41 HN6 H HN6 N N N 0 7.299 3.609 -1.398
42 HN6A H HN6A N N N 0 5.68 3.823 -1.002
43 H8 H H8 N N N 0 1.947 0.953 0.082
44 HN8 H HN8 N N N 0 -3.119 0.004 1.947
45 HA H HA N N N 0 -1.795 2.324 1.58
46 HB H HB N N N 0 -4.467 2.566 0.128
47 HBA H HBA N N N 0 -4.265 1.883 1.759
48 H1' H H1' N N N 0 3.462 -2.403 -0.774
49 H2' H H2' N N N 0 3.225 -1.329 2.093
50 HO2' H HO2' N N N 0 4.766 -3.126 2.403
51 H3' H H3' N N N 0 1.722 -3.062 2.605
52 HO3' H HO3' N N N 0 3.296 -4.784 2.003
53 H32 H H32 N N N 0 -5.469 -2.652 -0.049
54 H32A H H32A N N N 0 -5.386 -0.899 -0.347
55 H33 H H33 N N N 0 -5.248 -1.319 -2.787
56 H33A H H33A N N N 0 -5.331 -3.072 -2.489
57 H34 H H34 N N N 0 -7.552 -2.786 -1.423
58 H34A H H34A N N N 0 -7.468 -1.033 -1.72
59 HN35 H HN35 N N N 0 -8.704 -2.17 -3.443
60 HN3A H HN3A N N N 0 -7.301 -1.552 -4.089
61 H37 H H37 N N N 0 -0.947 4.715 -2.064
62 H37A H H37A N N N 0 0.411 5.141 -0.995
63 H37B H H37B N N N 0 0.587 3.819 -2.174
64 H4' H H4' N N N 0 0.958 -3.6 -0.16
65 H5' H H5' N N N 0 -0.546 -3.254 1.841
66 H5'A H H5'A N N N 0 -0.097 -1.531 1.826
67 HOD1 H HOD1 N N N 0 -5.028 5.463 2.262