Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 7MC    

Bonds between two atoms of the molecule

Total Number of Bonds: 69


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 CA C C C sing 1.51 N N
2 C N8 C N sing 1.35 N N
3 C O C O doub 1.21 N N
4 C36 N C N sing 1.35 N N
5 N CA N C sing 1.47 N N
6 N HN N H sing 0.97 N N
7 N8 P N P sing 1.64 N N
8 O1P P O P doub 1.48 N N
9 P O5' P O sing 1.61 N N
10 P O31 P O sing 1.61 N N
11 C2 N1 C N doub 1.32 N Y
12 N1 C6 N C sing 1.33 N Y
13 N3 C2 N C sing 1.32 N Y
14 C2 H2 C H sing 1.08 N N
15 N3 C4 N C doub 1.33 N Y
16 N9 C4 N C sing 1.37 N Y
17 C4 C5 C C sing 1.41 N Y
18 C5 N7 C N sing 1.35 N Y
19 C5 C6 C C doub 1.41 N Y
20 C6 N6 C N sing 1.38 N N
21 N6 HN6 N H sing 0.97 N N
22 N6 HN6A N H sing 0.97 N N
23 C8 N7 C N doub 1.3 N Y
24 N9 C8 N C sing 1.36 N Y
25 C8 H8 C H sing 1.08 N N
26 N8 HN8 N H sing 0.97 N N
27 C1' N9 C N sing 1.47 N N
28 CA CB C C sing 1.53 N N
29 CA HA C H sing 1.09 N N
30 CB CG C C sing 1.51 N N
31 CB HB C H sing 1.09 N N
32 CB HBA C H sing 1.09 N N
33 CG OD2 C O doub 1.21 N N
34 CG OD1 C O sing 1.34 N N
35 O4' C1' O C sing 1.44 N N
36 C1' C2' C C sing 1.55 N N
37 C1' H1' C H sing 1.09 N N
38 C3' C2' C C sing 1.55 N N
39 C2' O2' C O sing 1.43 N N
40 C2' H2' C H sing 1.09 N N
41 O2' HO2' O H sing 0.97 N N
42 C4' C3' C C sing 1.54 N N
43 O3' C3' O C sing 1.43 N N
44 C3' H3' C H sing 1.09 N N
45 O3' HO3' O H sing 0.97 N N
46 O31 C32 O C sing 1.43 N N
47 C32 C33 C C sing 1.53 N N
48 C32 H32 C H sing 1.09 N N
49 C32 H32A C H sing 1.09 N N
50 C34 C33 C C sing 1.53 N N
51 C33 H33 C H sing 1.09 N N
52 C33 H33A C H sing 1.09 N N
53 C34 N35 C N sing 1.47 N N
54 C34 H34 C H sing 1.09 N N
55 C34 H34A C H sing 1.09 N N
56 N35 HN35 N H sing 1.01 N N
57 N35 HN3A N H sing 1.01 N N
58 O38 C36 O C doub 1.21 N N
59 C36 C37 C C sing 1.51 N N
60 C37 H37 C H sing 1.09 N N
61 C37 H37A C H sing 1.09 N N
62 C37 H37B C H sing 1.09 N N
63 C5' C4' C C sing 1.53 N N
64 C4' O4' C O sing 1.44 N N
65 C4' H4' C H sing 1.09 N N
66 C5' O5' C O sing 1.43 N N
67 C5' H5' C H sing 1.09 N N
68 C5' H5'A C H sing 1.09 N N
69 OD1 HOD1 O H sing 0.97 N N