Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 8AG

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 68


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 P P P N N N 0 -5.689 2.908 1.173
2 O2P O O2P N N N 0 -6.808 3.404 0.341
3 O1P O O1P N N N 0 -5.202 4.074 2.17
4 O3P O O3P N N Y 0 -6.181 1.638 2.032
5 O5' O O5' N N N 0 -4.466 2.47 0.221
6 O3' O O3' N N N 0 -3.802 0.99 -3.91
7 C5' C C5' N N N 0 -4.607 1.528 -0.844
8 C4' C C4' R N N 0 -3.258 1.342 -1.542
9 O4' O O4' N N N 0 -2.309 0.712 -0.655
10 C3' C C3' S N N 0 -3.384 0.333 -2.712
11 C2' C C2' N N N 0 -1.933 -0.19 -2.846
12 C1' C C1' R N N 0 -1.291 0.122 -1.48
13 N9 N N9 N N N 0 -0.806 -1.116 -0.864
14 C4 C C4 N N N 0 -1.587 -2.185 -0.456
15 N3 N N3 N N N 0 -2.916 -2.366 -0.51
16 C2 C C2 N N N 0 -3.474 -3.469 -0.064
17 N2 N N2 N N N 0 -4.837 -3.609 -0.14
18 N1 N N1 N N N 0 -2.732 -4.475 0.472
19 C6 C C6 N N N 0 -1.39 -4.354 0.555
20 O6 O O6 N N N 0 -0.714 -5.252 1.034
21 C5 C C5 N N N 0 -0.787 -3.18 0.081
22 N7 N N7 N N N 0 0.567 -2.782 0.038
23 C8 C C8 S N N 0 0.594 -1.447 -0.575
24 N29 N N29 N N N 0 1.161 -0.474 0.362
25 C30 C C30 N N N 0 0.348 0.349 1.054
26 C45 C C45 N N N 0 0.927 1.312 2.057
27 O44 O O44 N N N 0 -0.85 0.313 0.869
28 C32 C C32 N Y N 0 2.546 -0.398 0.539
29 C31 C C31 N Y N 0 3.159 -1.212 1.5
30 C36 C C36 N Y N 0 4.498 -1.18 1.712
31 C35 C C35 N Y N 0 5.305 -0.306 0.95
32 C34 C C34 N Y N 0 4.667 0.547 -0.058
33 C33 C C33 N Y N 0 3.27 0.462 -0.234
34 C1 C C1 N Y N 0 6.683 -0.25 1.145
35 C39 C C39 N Y N 0 7.452 0.623 0.377
36 C38 C C38 N Y N 0 6.814 1.477 -0.631
37 C37 C C37 N Y N 0 5.436 1.42 -0.826
38 C43 C C43 N Y N 0 8.851 0.706 0.549
39 C42 C C42 N Y N 0 9.569 1.567 -0.216
40 C40 C C40 N Y N 0 7.623 2.349 -1.391
41 C41 C C41 N Y N 0 8.962 2.38 -1.175
42 H1P H H1P N N N 0 -5.889 4.387 2.774
43 H5'1 H H5'1 N N N 0 -4.942 0.572 -0.441
44 H5'2 H H5'2 N N N 0 -5.339 1.897 -1.561
45 H4' H H4' N N N 0 -2.876 2.299 -1.897
46 H3' H H3' N N N 0 -4.067 -0.477 -2.456
47 H1' H H1' N N N 0 -0.466 0.822 -1.61
48 H2'1 H H2'1 N N N 0 -1.93 -1.264 -3.033
49 H2'2 H H2'2 N N N 0 -1.409 0.338 -3.643
50 H21N H H21N N N N 0 -5.377 -2.898 -0.521
51 H22N H H22N N N N 0 -5.261 -4.418 0.186
52 H1 H H1 N N N 0 -3.167 -5.28 0.795
53 H7 H H7 N N N 0 1.331 -3.292 0.35
54 H451 H H451 N N N 0 1.244 2.222 1.547
55 H452 H H452 N N N 0 0.171 1.559 2.803
56 H453 H H453 N N N 0 1.786 0.854 2.548
57 H31 H H31 N N N 0 2.549 -1.883 2.088
58 H33 H H33 N N N 0 2.776 1.077 -0.971
59 H36 H H36 N N N 0 4.945 -1.818 2.461
60 HA H HA N N N 0 7.153 -0.878 1.887
61 H37 H H37 N N N 0 4.966 2.049 -1.568
62 H43 H H43 N N N 0 9.346 0.089 1.284
63 H3P H H3P N N N 0 -5.497 1.26 2.602
64 H40 H H40 N N N 0 7.178 2.988 -2.139
65 H42 H H42 N N N 0 10.639 1.626 -0.079
66 H3A H H3A N N N 0 -3.895 0.401 -4.67
67 H41 H H41 N N N 0 9.575 3.05 -1.76
68 H88 H H88 N N N 0 1.175 -1.466 -1.497