Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 8AG    

Bonds between two atoms of the molecule

Total Number of Bonds: 73


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 P O2P P O doub 1.48 N N
2 P O1P P O sing 1.61 N N
3 P O5' P O sing 1.61 N N
4 P O3P P O sing 1.61 N N
5 O5' C5' O C sing 1.43 N N
6 C5' C4' C C sing 1.53 N N
7 C4' O4' C O sing 1.44 N N
8 C4' C3' C C sing 1.55 N N
9 O4' C1' O C sing 1.44 N N
10 C3' O3' C O sing 1.43 N N
11 C3' C2' C C sing 1.55 N N
12 O3' H3A O H sing 0.97 N N
13 C2' C1' C C sing 1.54 N N
14 C1' N9 C N sing 1.47 N N
15 N9 C4 N C sing 1.39 N N
16 N9 C8 N C sing 1.47 N N
17 C4 N3 C N sing 1.34 N N
18 C4 C5 C C doub 1.39 N N
19 N3 C2 N C doub 1.31 N N
20 C2 N2 C N sing 1.37 N N
21 C2 N1 C N sing 1.36 N N
22 N1 C6 N C sing 1.35 N N
23 C6 O6 C O doub 1.22 N N
24 C6 C5 C C sing 1.4 N N
25 C5 N7 C N sing 1.41 N N
26 N7 C8 N C sing 1.47 N N
27 C8 N29 C N sing 1.46 N N
28 N29 C30 N C sing 1.35 N N
29 N29 C32 N C sing 1.4 N N
30 C30 C45 C C sing 1.51 N N
31 C30 O44 C O doub 1.21 N N
32 C32 C31 C C sing 1.4 N Y
33 C32 C33 C C doub 1.36 N Y
34 C31 C36 C C doub 1.36 N Y
35 C36 C35 C C sing 1.41 N Y
36 C35 C34 C C sing 1.47 N Y
37 C35 C1 C C doub 1.39 N Y
38 C34 C33 C C sing 1.41 N Y
39 C34 C37 C C doub 1.39 N Y
40 C1 C39 C C sing 1.39 N Y
41 C39 C38 C C doub 1.47 N Y
42 C39 C43 C C sing 1.41 N Y
43 C38 C37 C C sing 1.39 N Y
44 C38 C40 C C sing 1.41 N Y
45 C40 C41 C C doub 1.36 N Y
46 C43 C42 C C doub 1.36 N Y
47 C42 C41 C C sing 1.4 N Y
48 O1P H1P O H sing 0.97 N N
49 C5' H5'1 C H sing 1.09 N N
50 C5' H5'2 C H sing 1.09 N N
51 C4' H4' C H sing 1.09 N N
52 C3' H3' C H sing 1.09 N N
53 C1' H1' C H sing 1.09 N N
54 C2' H2'1 C H sing 1.09 N N
55 C2' H2'2 C H sing 1.09 N N
56 N2 H21N N H sing 0.97 N N
57 N2 H22N N H sing 0.97 N N
58 N1 H1 N H sing 0.97 N N
59 N7 H7 N H sing 0.97 N N
60 C45 H451 C H sing 1.09 N N
61 C45 H452 C H sing 1.09 N N
62 C45 H453 C H sing 1.09 N N
63 C31 H31 C H sing 1.08 N N
64 C33 H33 C H sing 1.08 N N
65 C36 H36 C H sing 1.08 N N
66 C1 HA C H sing 1.08 N N
67 C37 H37 C H sing 1.08 N N
68 C43 H43 C H sing 1.08 N N
69 C40 H40 C H sing 1.08 N N
70 C42 H42 C H sing 1.08 N N
71 C41 H41 C H sing 1.08 N N
72 C8 H88 C H sing 1.09 N N
73 O3P H3P O H sing 0.97 N N