Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : 8QI

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 47


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 N N N 0 -0.902 -0.263 -0.633
2 C17 C C2 N N N 0 -1.605 2.092 0.255
3 C24 C C3 N Y N 0 2.914 2.802 1.074
4 C26 C C4 N Y N 0 4.173 1.171 0.4
5 C02 C C5 N N N 0 3.716 -0.812 -1.394
6 C05 C C6 N Y N 0 2.955 1.066 -0.283
7 C07 C C7 N N N 0 0.816 2.412 -0.275
8 C08 C C8 S N N 0 -0.181 1.657 0.607
9 C11 C C9 S N N 0 -0.71 -1.777 -0.746
10 C19 C C10 N N N 0 -3.894 1.817 0.912
11 C27 C C11 N N N 0 5.181 0.214 0.139
12 N01 N N1 N N N 0 3.482 -1.813 -2.302
13 N03 N N2 N N N 0 4.922 -0.762 -0.76
14 N04 N N3 N N N 0 2.772 0.072 -1.16
15 N06 N N4 N Y N 0 2.181 2.104 0.158
16 N25 N N5 N Y N 0 4.085 2.252 1.212
17 O09 O O1 N N N 0 -0.043 0.252 0.386
18 O12 O O2 N N N 0 0.626 -2.057 -1.168
19 O14 O O3 N N N 0 -0.676 -4.123 0.793
20 O15 O O4 N N N 0 -0.139 -1.916 1.894
21 O16 O O5 N N N 0 -2.552 -2.349 1.292
22 O18 O O6 N N N 0 -2.527 1.475 1.155
23 O21 O O7 N N N 0 -3.67 1.306 -1.734
24 O22 O O8 N N N 0 -4.369 -0.661 -0.315
25 O23 O O9 N N N 0 -6.029 1.31 -0.837
26 O28 O O10 N N N 0 6.256 0.268 0.71
27 P13 P P1 N N N 0 -1.009 -2.55 0.878
28 P20 P P2 N N N 0 -4.49 0.925 -0.562
29 H1 H H1 N N N 0 -0.658 0.206 -1.586
30 H2 H H2 N N N 0 -1.94 -0.047 -0.378
31 H3 H H3 N N N 0 -1.685 3.175 0.338
32 H4 H H4 N N N 0 -1.835 1.788 -0.766
33 H5 H H5 N N N 0 2.574 3.68 1.603
34 H6 H H6 N N N 0 0.686 2.106 -1.313
35 H7 H H7 N N N 0 0.64 3.484 -0.187
36 H8 H H8 N N N 0 0.019 1.881 1.655
37 H9 H H9 N N N 0 -1.413 -2.179 -1.475
38 H10 H H10 N N N 0 -4.497 1.537 1.775
39 H11 H H11 N N N 0 -3.975 2.891 0.744
40 H12 H H12 N N N 0 2.629 -1.862 -2.762
41 H13 H H13 N N N 0 4.169 -2.473 -2.485
42 H14 H H14 N N N 0 5.598 -1.429 -0.956
43 H15 H H15 N N N 0 1.306 -1.727 -0.565
44 H16 H H16 N N N 0 -0.813 -4.599 1.623
45 H17 H H17 N N N 0 -3.18 -2.74 0.669
46 H18 H H18 N N N 0 -4.882 -0.982 0.439
47 H19 H H19 N N N 0 -6.412 0.871 -1.608