Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 8QI    

Bonds between two atoms of the molecule

Total Number of Bonds: 48


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O28 C27 O C doub 1.22 N N
2 N03 C27 N C sing 1.35 N N
3 N03 C02 N C sing 1.36 N N
4 N01 C02 N C sing 1.37 N N
5 C27 C26 C C sing 1.41 N N
6 C02 N04 C N doub 1.31 N N
7 C26 C05 C C doub 1.4 N Y
8 C26 N25 C N sing 1.35 N Y
9 N04 C05 N C sing 1.34 N N
10 C05 N06 C N sing 1.37 N Y
11 N25 C24 N C doub 1.3 N Y
12 N06 C24 N C sing 1.37 N Y
13 N06 C07 N C sing 1.46 N N
14 O15 P13 O P doub 1.48 N N
15 O14 P13 O P sing 1.61 N N
16 P13 O16 P O sing 1.61 N N
17 P13 C11 P C sing 1.82 N N
18 C07 C08 C C sing 1.53 N N
19 C10 C11 C C sing 1.53 N N
20 C10 O09 C O sing 1.43 N N
21 C08 O09 C O sing 1.43 N N
22 C08 C17 C C sing 1.53 N N
23 C11 O12 C O sing 1.43 N N
24 C19 O18 C O sing 1.43 N N
25 C19 P20 C P sing 1.82 N N
26 C17 O18 C O sing 1.43 N N
27 O21 P20 O P doub 1.48 N N
28 P20 O23 P O sing 1.61 N N
29 P20 O22 P O sing 1.61 N N
30 C10 H1 C H sing 1.09 N N
31 C10 H2 C H sing 1.09 N N
32 C17 H3 C H sing 1.09 N N
33 C17 H4 C H sing 1.09 N N
34 C24 H5 C H sing 1.08 N N
35 C07 H6 C H sing 1.09 N N
36 C07 H7 C H sing 1.09 N N
37 C08 H8 C H sing 1.09 N N
38 C11 H9 C H sing 1.09 N N
39 C19 H10 C H sing 1.09 N N
40 C19 H11 C H sing 1.09 N N
41 N01 H12 N H sing 0.97 N N
42 N01 H13 N H sing 0.97 N N
43 N03 H14 N H sing 0.97 N N
44 O12 H15 O H sing 0.97 N N
45 O14 H16 O H sing 0.97 N N
46 O16 H17 O H sing 0.97 N N
47 O22 H18 O H sing 0.97 N N
48 O23 H19 O H sing 0.97 N N