Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : A1AKG

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 36


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N Y N 0 -1.878 -0.856 -1.462
2 N3 N N2 N Y N 0 -5.104 0.69 0.449
3 C4 C C1 N Y N 0 -1.756 -0.263 -0.275
4 C5 C C2 N Y N 0 -3.05 -0.959 -2.054
5 C6 C C3 N Y N 0 -4.149 0.115 -0.345
6 C7 C C4 N Y N 0 -4.531 1.181 1.591
7 C8 C C5 N Y N 0 -3.207 0.946 1.579
8 C10 C C6 N Y N 0 2.49 0.931 0.027
9 C13 C C7 N Y N 0 2.769 2.713 -1.537
10 O2 O O1 N N N 0 -0.343 0.395 1.469
11 C3 C C8 N N N 0 -0.436 -0.149 0.386
12 C9 C C9 N Y N 0 -2.912 0.25 0.331
13 N2 N N3 N Y N 0 -4.162 -0.492 -1.523
14 N N N4 N N N 0 0.663 -0.649 -0.213
15 C2 C C10 S N N 0 1.983 -0.442 0.388
16 C1 C C11 N N N 0 2.955 -1.499 -0.14
17 C C C12 N N N 0 2.523 -2.862 0.337
18 O1 O O2 N N N 0 3.165 -3.959 -0.095
19 O O O3 N N N 0 1.599 -2.967 1.109
20 C14 C C13 N Y N 0 2.29 1.45 -1.243
21 N4 N N5 N Y N 0 3.409 3.421 -0.627
22 C12 C C14 N Y N 0 3.611 2.961 0.593
23 C11 C C15 N Y N 0 3.161 1.707 0.96
24 H1 H H1 N N N 0 -6.049 0.743 0.234
25 H6 H H2 N N N 0 -3.102 -1.447 -3.016
26 H7 H H3 N N N 0 -5.064 1.684 2.385
27 H8 H H4 N N N 0 -2.497 1.22 2.345
28 H11 H H5 N N N 0 2.618 3.124 -2.524
29 H5 H H6 N N N 0 0.58 -1.145 -1.042
30 H H H7 N N N 0 1.906 -0.528 1.472
31 H3 H H8 N N N 0 2.957 -1.479 -1.23
32 H4 H H9 N N N 0 3.959 -1.286 0.229
33 H2 H H10 N N N 0 2.852 -4.811 0.239
34 H12 H H11 N N N 0 1.768 0.875 -1.993
35 H10 H H12 N N N 0 4.139 3.57 1.312
36 H9 H H13 N N N 0 3.329 1.337 1.96