Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : A1H2A

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 58


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O2 O O1 N N N 0 -4.326 -0.544 1.541
2 C9 C C1 N N N 0 -5.4 -3.228 2.022
3 C8 C C2 N N N 0 -4.007 -2.939 1.46
4 C7 C C3 N N N 0 1.891 -0.498 -0.263
5 C6 C C4 N N N 0 1.087 -1.469 -1.13
6 N3 N N1 N Y N 1 -2.473 -0.57 -0.943
7 S1 S S1 N Y N 0 -1.262 -2.24 0.417
8 C5 C C5 N Y N 0 -0.38 -1.333 -0.809
9 C4 C C6 N Y N 0 -1.24 -0.502 -1.404
10 C3 C C7 N N N 0 -5.108 -1.719 -0.397
11 C1 C C8 S N N 0 -4.039 -1.634 0.662
12 C2 C C9 N Y N 0 -2.7 -1.412 0.007
13 C2' C C10 N Y N 0 -4.032 3.633 0.973
14 C4' C C11 N Y N 0 -2.976 2.65 -0.82
15 C5' C C12 N Y N 0 -3.716 1.486 -0.599
16 C6' C C13 N Y N 0 -4.619 1.471 0.446
17 C7' C C14 N N N 0 -3.539 0.279 -1.483
18 CM2 C C15 N N N 0 -4.215 4.837 1.861
19 CM4 C C16 N N N 0 -0.835 0.437 -2.511
20 N1' N N2 N Y N 0 -4.749 2.552 1.203
21 N3' N N3 N Y N 0 -3.163 3.693 -0.016
22 N4' N N4 N N N 0 -2.062 2.716 -1.858
23 O10 O O2 N N N 0 -5.045 -2.674 -1.339
24 O1A O O3 N N N 0 4.313 0.078 1.627
25 O1B O O4 N N N 0 7.344 -0.41 1.714
26 O2A O O5 N N N 0 4.232 1.799 -0.218
27 O2B O O6 N N N 0 8.337 -1.155 -0.485
28 O3A O O7 N N N 0 5.872 -0.252 -0.331
29 O3B O O8 N N N 0 7.898 1.386 0.029
30 O7 O O9 N N N 0 3.281 -0.627 -0.567
31 O9 O O10 N N N 0 -6.022 -0.928 -0.399
32 PA P P1 N N N 0 4.422 0.246 0.16
33 PB P P2 N N N 0 7.362 -0.114 0.263
34 HO2 H H1 N N N 0 -3.678 -0.43 2.249
35 H92 H H2 N N N 0 -5.706 -2.41 2.674
36 H91 H H3 N N N 0 -6.111 -3.322 1.201
37 H9 H H4 N N N 0 -5.377 -4.157 2.591
38 H8 H H5 N N N 0 -3.296 -2.844 2.282
39 H81 H H6 N N N 0 -3.701 -3.756 0.808
40 H72 H H7 N N N 0 1.568 0.523 -0.466
41 H71 H H8 N N N 0 1.726 -0.728 0.79
42 H61 H H9 N N N 0 1.252 -1.238 -2.182
43 H62 H H10 N N N 0 1.41 -2.49 -0.926
44 H6' H H11 N N N 0 -5.208 0.589 0.646
45 H7'1 H H12 N N N 0 -3.272 0.601 -2.489
46 H7'2 H H13 N N N 0 -4.47 -0.286 -1.518
47 HM21 H H14 N N N 0 -4.996 5.476 1.449
48 HM23 H H15 N N N 0 -4.502 4.51 2.86
49 HM22 H H16 N N N 0 -3.28 5.394 1.915
50 HM42 H H17 N N N 0 -0.582 1.409 -2.089
51 HM41 H H18 N N N 0 0.032 0.031 -3.033
52 HM43 H H19 N N N 0 -1.661 0.549 -3.214
53 HN42 H H20 N N N 0 -2.197 2.184 -2.658
54 HN41 H H21 N N N 0 -1.286 3.294 -1.785
55 H1 H H22 N N N 0 -5.753 -2.689 -1.997
56 H2 H H23 N N N 0 4.291 1.984 -1.165
57 H3 H H24 N N N 0 9.253 -1.127 -0.176
58 H4 H H25 N N N 0 7.936 1.649 -0.901